Limnohabitans sp. INBF002: LINBF2_17920
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Entry
LINBF2_17920 CDS
T09962
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03030
DNA replication
limi03410
Base excision repair
limi03420
Nucleotide excision repair
limi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LINBF2_17920 (polA)
03410 Base excision repair
LINBF2_17920 (polA)
03420 Nucleotide excision repair
LINBF2_17920 (polA)
03440 Homologous recombination
LINBF2_17920 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limi03032
]
LINBF2_17920 (polA)
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_17920 (polA)
Enzymes [BR:
limi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LINBF2_17920 (polA)
DNA replication proteins [BR:
limi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LINBF2_17920 (polA)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LINBF2_17920 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LINBF2_17920 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BDU53557
LinkDB
All DBs
Position
complement(1825190..1827988)
Genome browser
AA seq
932 aa
AA seq
DB search
MSESKTLLLVDGSSYLYRAFHAMPDLRAVPGDPTSAATGAIRGMINMMQALRKEVPTQLA
ACVFDAKGPTFRDEMYPAYKANRSPMPDDLRSQIEPIHAMVRMLGWTVLDVPGVEADDVI
ATLAVTAAKQGVTVVVSSGDKDLSQLVNEHITIMDTMNGKKRDVAGVTAEFGVPPSLMID
YQTLVGDTVDNVPGVQKVGPKTAAKWLMEYGSLDNLMQNASAIKGVAGENLRQAVEWLPT
GRQLVTMKTDCDLSAYVPGLPALDTLHLAEPDKLALKTFYETYGFKGLARAISEGTDSSS
SAGRASGAAAKPKFEPNPGLFDEPEPTVSQVSDKAYDCVLTWEAFDTWLAKLQAAELVAF
DTETTSLDAMRAKIVGLSFSMKPGEACYIPLTHSYGDAPTQLPIDEVLAKLKPWFENPAI
HKVGQHIKYDRHVMANHGIEVKGYAHDTMLQSYVLEVHKPHGLASLAERHVGRKGLNYED
LCGKGAHQIPFSQVDVARATEYSCEDSDMTLDVHHVLWPRLQADDKLRFIYQLEIDSSEA
LYRIERNGVLIDAPTLAAQSHALGQRIVQLENESYEIAGQPFNLASPKQLGEIFFDKLGL
PVIKKTATGARSTDEEVLEKLAEDYPLPAKILEHRSLSKLKGTYTDKLALMALPRTGRVH
THYAQAVAVTGRLSSNDPNLQNIPIRTAEGRKVREAFVAPAGCVIASADYSQIELRIMAH
ISGDEALVKAFHEGLDVHRATAAEVFGVAVGDVSTEQRRYAKVINFGLIYGMSAFGLAKA
LGIDNTAAKNYITRYFERFAGVKRYMDDTREQAKAQGYVETVFGRRLYLPEINSPNGPRR
AGAERAAINAPMQGTAADLIKMSMVAVQKAIDQQQRETKVIMQVHDELVFEVPESEVEWV
RTEVPRLMADVAQLKVPLLAEVGVGPNWDKAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatccaaaacattgctgctggtcgacggctccagctacctctaccgcgccttc
catgccatgcccgacttgcgcgctgtacccggtgacccaacgagcgccgccacaggcgcc
attcgcggcatgatcaacatgatgcaagccctgcgcaaagaggtgcccacccagttggcc
gcttgcgtgtttgacgccaaaggccccactttccgcgacgagatgtaccccgcgtacaaa
gccaaccgctcgcccatgcctgatgacttgcgctcgcaaatcgagcccattcacgccatg
gtgcgcatgttgggttggaccgtgctcgatgtgcctggcgttgaggccgatgacgtgatt
gccaccttggccgtgaccgctgccaagcaaggcgtgacggtggtggtgtcgagcggtgac
aaagacttgagccaactggtgaacgaacacatcaccatcatggacaccatgaacggcaag
aagcgcgacgtggcgggtgtgactgccgagtttggcgtaccgccttcgctgatgattgac
taccaaaccttggtgggcgacacggtggacaacgtgccaggtgtgcaaaaggtcggcccc
aagaccgccgccaagtggctgatggaatatggctcgctcgacaacttgatgcaaaacgcc
agcgccatcaaaggcgtggcgggcgagaacttgcgtcaagcggttgaatggctgcccacg
ggccgccagctggtgaccatgaaaaccgattgcgatttgtcggcctatgtgccgggtttg
cccgcgctggatacgctgcacttggctgagcccgacaagcttgcactcaaaaccttttat
gagacctatggcttcaagggcttggcccgcgccatcagcgagggcactgattcaagcagt
tcagcaggacgcgcatcaggcgctgctgccaagccaaagtttgagcccaaccccggcctg
tttgacgaacccgagcccacggtctcgcaagtgagcgacaaagcgtacgactgcgtgttg
acgtgggaggcgtttgacacctggctggccaaactacaagctgcagagctggtggcgttt
gacaccgagactacctcactcgacgccatgcgcgctaagattgtgggcttgagtttttca
atgaagccgggtgaggcttgttacatcccgcttacccacagctacggcgatgcgcccacc
caattgcccatcgacgaggtgctggccaagctcaaaccgtggtttgaaaacccagccatt
cacaaggtgggtcagcacatcaaatacgaccgccatgtcatggccaaccacggcattgag
gtgaagggctacgcgcacgacaccatgctgcaaagctatgtgctggaagtgcacaagccc
cacggcttggccagcttggccgagcgccatgtgggccgcaaagggttgaactacgaagac
ctgtgcggcaaaggcgcgcaccaaattccgttctcgcaagtggacgtggctcgtgccacc
gaatactcgtgcgaagactccgacatgacgctggacgtgcaccacgtgttgtggccgcgt
ttgcaagccgacgacaaactgcgctttatctaccaactggaaattgacagcagcgaagcg
ctgtaccgcatcgagcgcaacggcgtgttgattgacgcgcccaccttggccgcacaaagc
cacgcgctgggccaacgcattgtgcagttggaaaacgagtcgtacgaaattgcgggccag
ccgtttaacttggccagccctaagcaactgggcgaaatcttcttcgacaaactgggcttg
cccgtcatcaaaaaaaccgccacgggcgcacgcagcaccgacgaagaagtgctggagaaa
ttagccgaagactatccgttgcccgccaagattttggagcatcggtctttgagcaagctc
aaaggcacctacaccgacaagctggcgctgatggctttgccacgcacaggccgcgtgcac
acgcactacgcgcaagccgtggcggtaacgggtcgcctgtctagcaacgaccccaacttg
cagaacatcccgattcgcactgccgaaggccgcaaagtgcgcgaagcatttgtggcccct
gcgggctgcgtgattgccagcgccgactacagccagatcgagctgcgcatcatggcgcac
atcagtggcgacgaggccttggtgaaagcctttcacgaaggtttagacgtgcaccgcgcc
accgccgctgaagtgtttggcgtggccgtgggcgacgtgagcaccgagcaacgccgctat
gccaaggtcattaactttggcctcatctacggcatgagcgcctttggtttggccaaggcg
ctgggcatcgacaacaccgcggccaagaactacatcacccgctactttgaacgcttcgcg
ggcgtgaagcgctacatggacgacacacgcgaacaagccaaagcacaaggttatgttgaa
accgtgtttggccgccgcttgtacttgcccgaaatcaacagccccaacggcccacgccgc
gcaggcgcagagcgcgccgccatcaacgcgcccatgcagggcacagccgccgacctcatc
aagatgagcatggtggccgtgcaaaaagccattgaccaacaacagcgcgaaaccaaagtc
atcatgcaagtgcacgatgaactggtgtttgaagtgcccgagtcagaagtggaatgggtg
cgcaccgaagtgccacgcttgatggctgacgtggctcagctcaaagtacctctgctggca
gaggtcggtgtgggacccaactgggacaaggcgcactaa
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