Limnohabitans sp. INBF002: LINBF2_17950
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Entry
LINBF2_17950 CDS
T09962
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03420
Nucleotide excision repair
limi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LINBF2_17950
03430 Mismatch repair
LINBF2_17950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_17950
Enzymes [BR:
limi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LINBF2_17950
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LINBF2_17950
MMR (mismatch excision repair)
Other MMR factors
LINBF2_17950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
BDU53560
LinkDB
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Position
complement(1830155..1832581)
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AA seq
808 aa
AA seq
DB search
MHFSPDTSPLLQGLNNEQAAAVTLPQAHALILAGAGSGKTRVLTTRIAWLMQTGQVSPGG
ILAVTFTNKAAKEMLTRLSAMLPVSVRGMWVGTFHGLCNRFLRAHWKLANLPQSFQILDT
QDQLSAIKRLSKQFNVDDERFPPKETMRFIAGCKEDGLRPKDVVARDPDDRKRVELYELY
EAQCQREGVVDFGELMLRSYELLRDNDSLREHYRRRFQHILVDEFQDTNKLQYAWLKQLA
GPVDQGGGAILAVGDDDQSIYAFRGARVGNMADFVREYKVEHQIKLEQNYRSFSNILDSA
NHLISHNKGRLGKNLHTTQGAGEPVRVYESPTDFAEAQWMVEEMKQLLRDGKNDVGDRGA
GANGVQHRSEIAVLYRSNAQSRVIETALFNAGMPYRVYGGLRFFERAEIKHALAYLRLLE
NPRDDTSFMRVVNFPPRGIGARSIEQLQDASRAMGCAMSDAVTAVAGKAGANLSAFVAKI
DVLREQTQGQNLRQIIELLLDHSGLITHYQGEREGQDRIENLQELVNAAESFVTQEGFGR
DAVALPIDEHGQPLATDTNAMPSEGELTRQAAPQTMINADTGETLSPLAAFLTHAALESG
DNQAQAGQDAIQLMTVHASKGLEFDCVFITGMEEGLFPHENSMNDFDGLEEERRLMYVAI
TRARKRLYLSHSQTRMLHGQTRYNLKSRFFEELPEHTMKWITPARSAFAYAMPSRRDAWQ
NNNGWQNNAWGGGAATAVAPKPVPQRAAPVTSGPNAWVRSGVQVFHAKFGEGAVISIEGL
GDDARAQVNFPRHGTKWLALSVAKLTQV
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgcatttttcacccgatacctcgcccttgctccaaggcctcaacaacgaacaagcggcg
gcggtcacgttgcctcaggcgcacgcgctgattttggcgggcgcgggttcgggcaagacg
cgggtgctgaccacgcgcatcgcgtggctcatgcaaaccgggcaggtgtcgccgggcggc
atcttggcggtcacgtttaccaacaaggctgccaaagaaatgctcacgcgtttgtcggcc
atgttgcctgtgagtgtgcgcggcatgtgggtgggcacctttcacggtctgtgcaaccgc
tttttgcgggcccactggaagctggccaacttgccccagtcttttcaaatcttggacacc
caagaccagctcagcgccatcaagcgtttgagcaaacagttcaatgtggatgacgagcgt
tttccacccaaagaaaccatgcgcttcatcgccggttgcaaagaggacggcttgcgtccc
aaagacgtggtggcccgcgacccagacgaccgcaaacgtgtggagctctacgagctgtac
gaagcccaatgccaacgcgaaggtgtggtggactttggtgaactcatgctgcgctcttac
gagctgctgcgcgacaacgactcgctgcgcgagcactaccgccgccgctttcaacacatc
ttggtggacgaatttcaagacaccaacaagctgcaatacgcctggctcaagcaactcgct
ggcccagtggaccaaggcggcggtgccatcttggctgtgggcgacgatgaccaaagcatt
tacgccttccgtggcgcacgcgtgggcaacatggccgactttgtgcgcgagtacaaggtt
gaacaccaaatcaagctcgagcaaaactatcgcagcttcagcaacatcttggacagtgcc
aaccatctgatcagccacaacaaaggccgcttgggtaaaaacctgcacaccacgcagggc
gcaggcgagcctgtgcgtgtgtatgaatcccccaccgactttgccgaggcgcaatggatg
gtggaggagatgaagcaactcttgcgtgatggcaaaaatgatgtgggtgatcgtggcgct
ggcgcaaatggtgtgcagcaccgcagcgaaattgcggtgctctaccgcagcaacgcacaa
agccgcgtgatcgaaaccgcactgttcaacgcaggcatgccgtaccgcgtgtacggtggt
ttgcgcttcttcgagcgcgctgaaatcaaacacgctttggcttatttgcgtttgttagaa
aacccacgcgacgacaccagcttcatgcgtgtggtcaacttcccgccgcgtggtattggc
gcgcgcagcatcgaacagctgcaagacgcctcgcgtgccatgggctgcgccatgagcgac
gccgtcacggccgtggcgggcaaagccggtgccaacctcagtgcctttgtggccaagatt
gatgtgctgcgcgagcaaacacaggggcaaaatctgcgccaaatcattgagctgttgctt
gaccactcaggcttgatcacccactaccaaggtgagcgcgaaggccaagaccgcattgaa
aacttgcaggaattggtcaacgctgccgagagctttgtcacgcaagaaggctttggccgc
gatgctgtggccttgccgattgacgagcacggtcagcctttggcgacagacacaaacgcg
atgccgagcgaaggcgaactcacacgccaagctgcaccccaaaccatgatcaacgccgac
accggcgaaaccttgtcgcccttggcagccttcctcacgcatgccgcgttggagtcgggc
gacaaccaagcgcaagcgggtcaagacgccattcagctcatgacggtacatgcctcgaag
ggcttggagtttgattgcgtgttcatcacaggcatggaagagggcttgttcccccacgaa
aactcgatgaacgactttgacggcctggaagaagaacgccgcctcatgtatgtggctatc
acacgtgcgcgtaagcgtttgtacctgagccattcgcaaacccgcatgttgcatggccaa
acgcgctacaacttgaaaagtcgtttcttcgaagagctgccagagcacacgatgaagtgg
atcacgcctgcgcgttcagcctttgcctatgccatgccttcgcgccgcgatgcatggcag
aacaacaacggctggcaaaacaacgcatggggtggcggtgcggctacagccgtggctccc
aagcctgtacctcaacgtgcagcccctgtgaccagtggtcctaacgcatgggtgcgcagc
ggtgtgcaggtgttccacgccaagtttggcgagggtgcggtgatcagcattgaaggttta
ggcgacgatgcacgtgcgcaagtgaacttcccgcgtcacggcaccaagtggctggcgctg
agtgtggccaagctcacacaggtgtga
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