Limnohabitans sp. INBF002: LINBF2_20310
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Entry
LINBF2_20310 CDS
T09962
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LINBF2_20310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limi03019
]
LINBF2_20310
03009 Ribosome biogenesis [BR:
limi03009
]
LINBF2_20310
Enzymes [BR:
limi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LINBF2_20310
Messenger RNA biogenesis [BR:
limi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LINBF2_20310
Ribosome biogenesis [BR:
limi03009
]
Prokaryotic type
rRNA processing factors
LINBF2_20310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
BDU53796
LinkDB
All DBs
Position
2038715..2041690
Genome browser
AA seq
991 aa
AA seq
DB search
MKRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSVSQARIQDVIKEGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAKGAKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYEQAHQ
FMAHVMPEHAARVKRYSDETPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSVD
VNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESRNRRDVENRL
REALRHDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHVRDTESSALQI
LRIIQEEAMKDNTAAVYAQVPVEVASFLLNEKRTEIAKIEIQQRLNVLLVPNKTLETPNY
KLERLKHDDPRLDRVEASYKMAEEFEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPAHEP
KPAAPAKAPAHARGPKPAAKAPEAKSGGLWGWFTGLFSSDSEEKAKPAVGDKKPGERGER
RDGRSANGRGGRGGRGGRGGDRAERGTEGRTERNAEGRTERNAEGVEARGERPARGERAE
RGERNVEQRGEGGRSEGGREGRGPRQDRNRGGRGEGRNGEGRNVEGQAALDNNASPEAQA
EARAKARNERMAREERGESTEGGNEPREPRGDRAERGERGEGQGRRERSPRGERNEGRRE
RAPRVDENGNPEVLPLDNAAATEGQAPQTDENGGERRERRSRDRYGRDRRERGDRAPREE
GSAEHADQGPAAEHDNTSQEQAPQEAREPRQPREPRGERTERQERPERSERSERAPRQAP
REASQPEAPVAQAAARQGMPSIQAFTLPVSAMQAVAQSSGLEWVNSNPESIAAVQAAIAA
EPKPVHVPRERPPVVILDEGPLVLVETRKDL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctaattaacgcaacccagtcggaagaacgccgcctggccatcgtcgac
ggccaaaaactgctcgactatgaaatcgaaatcgaaggccgcgaacagcgcaaaggcaac
atctacaaagccgtagtcacccgcgtcgagccatctctcgaagcttgctttgtggattac
ggcgaagaccgccacggcttcttgccgttcaaagaaatttccaaacagtacttcgccgaa
ggcgtgtcggtgagccaagcgcgcatccaagacgtcatcaaagaaggccaagagctgttg
gtccaagtggaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatctcg
ctggctggccgctatgtggtgctcatgcccaacaacccacgcggtggtggcgtcagccgc
cgcatcgagggcgacgaccgtgcagaactcaaagaagcgatggaccaattggaatacccc
aagggcatgtccatcatcgcgcgcaccgctggcattggccgcagcgcccctgagttgcaa
tgggacttgaactacttgctcaagttgtggaccgccattgacggcgccaagggtgccaaa
ggcgcgttcttgatttatcaagaatccagcttggtcatccgcgccatccgtgactacttc
aaccatgacatcggcgacatcttgatcgacaccgatgacatctatgagcaagcgcatcag
ttcatggcccacgtcatgcctgagcacgccgctcgcgtgaagcgctacagcgacgaaacc
ccgctgttcagccgcttccaaatcgaacaccaaatcgagtcggcctacgcccgcaccgtc
aacctgccatccggcggcgcgattgtgattgaccacaccgaagccttggtgtcggtggac
gtcaactcggcccgcgccatcaaaggcggcgacattgaagaaaccgccacccgcaccaac
ctcgaagccgccgacgaagtggcccgccaaatgcgcttgcgcgatttgggtggcctgatc
gtcatcgacttcattgacatggacgaaagccgcaaccgccgtgacgtggaaaaccgcttg
cgcgaagccttgcgccacgaccgtgcccgcgtgcaatttggcaccatcagcaaattcggc
ttgatggaaatgagccgccaacgcctgcgccctgcgctgagcgaaggcgcttcgattcca
tgcccacgttgcggcggctctggccacgtgcgtgacaccgagagctcggctctgcaaatc
ttgcgcatcatccaagaagaggccatgaaggacaacacggctgccgtatacgcccaagtg
ccggtggaagtggcctcgttcttgttgaacgagaagcgcactgagattgccaagatcgaa
atccaacaacgcttgaacgtgttgctcgtgccaaacaagacactggaaacacccaactac
aagttggagcgtctgaagcacgacgacccacgcctcgaccgcgtggaagccagttacaaa
atggccgaggagtttgaagaccccaccgccgtgacacgtcgctcacaagagcccaccaac
aagcaaacgcctgtcatcaaaggcgtgttgcctgatgcaccggcacccgcgcatgagcct
aagcctgctgcacctgcgaaagcacctgcacacgcacgcggccctaagcctgcggccaaa
gcacctgaagctaaatcgggcggcttgtggggttggttcactggcttgttcagcagtgac
tcggaagaaaaagccaagccagccgtgggcgacaaaaagccaggcgaacgcggcgagcgc
cgtgatggccgcagtgccaatggccgaggcggccgtggtggtcgcggtggccgtggtggt
gaccgcgccgaacgtggcactgaaggccgtaccgagcgcaacgccgaaggccgcactgag
cgcaacgctgaaggcgttgaagcccgtggcgaacgcccagcgcgcggtgagcgtgcagag
cgcggcgagcgcaatgtggaacaacgcggtgaaggtggtcgcagcgagggtggccgcgaa
ggccgtggcccacgccaagaccgcaaccgcggtggccgtggtgaaggtcgcaacggtgaa
ggccgtaacgtcgaaggccaagcggctctcgacaacaacgcctcccccgaagcccaagcc
gaagcacgcgccaaagcgcgcaacgagcgcatggcccgcgaagagcgtggcgaaagcacc
gaaggcggcaacgagccacgcgaacctcgcggtgaccgtgctgaacgcggcgaacgtggt
gagggccaaggccgtcgcgaacgtagcccacgcggcgaacgcaacgaaggccgccgtgag
cgcgccccacgcgttgacgaaaacggcaatccagaagttttgccactcgacaacgccgca
gccaccgaaggtcaagcaccgcaaaccgacgagaacggtggcgagcgtcgtgagcgccgc
tcacgcgaccgctacggccgtgaccgccgcgagcgtggcgaccgcgcaccgcgtgaagaa
ggttctgcagaacacgccgatcaaggcccagccgctgagcacgacaacacgtctcaagag
caagcgcctcaagaagcccgcgagcctcgccaaccccgtgaaccacgcggtgaacgtact
gagcgccaagagcgtccagagcgcagcgagcgttcggaacgtgccccacgtcaagcgcct
cgtgaagcctcacagccagaagcacctgtggcacaagccgctgcacgccaaggcatgcca
agcatccaagcgttcacattgcctgtgtctgcgatgcaagcagtggcccaaagcagcggt
ttggaatgggtcaactccaatccagaaagcatcgctgcggtgcaagctgcgattgcagcc
gagcccaagcccgtgcatgtgccacgcgagcgtccacctgtggtgatcttggatgaaggt
ccattggtgttggttgagacccgcaaggatctgtaa
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