Limnohabitans sp. INBF002: LINBF2_21970
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Entry
LINBF2_21970 CDS
T09962
Symbol
hupB_2
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
limi
Limnohabitans sp. INBF002
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limi03032
]
LINBF2_21970 (hupB_2)
03036 Chromosome and associated proteins [BR:
limi03036
]
LINBF2_21970 (hupB_2)
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_21970 (hupB_2)
DNA replication proteins [BR:
limi03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
LINBF2_21970 (hupB_2)
Chromosome and associated proteins [BR:
limi03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
LINBF2_21970 (hupB_2)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
LINBF2_21970 (hupB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
CoA_trans
DUF2291
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
BDU53962
LinkDB
All DBs
Position
complement(2203990..2204262)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTELIEHIAGKSDISKAAATRALASIIEAVKKTLKKGDTVTLVGFGTFSVSKRAARTG
RNPRTGAALKIKAAKVPRFKPGKGLKDALN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagacagaactcattgaacacatcgcaggtaaatctgatatttctaaagctgct
gccacacgcgcactcgcttccatcattgaggctgtcaaaaagacactcaaaaaaggcgac
accgtgactctggttggttttggcactttcagtgtgagcaaacgtgcagcacgcacaggc
cgtaacccacgtactggcgctgctttgaaaatcaaggccgctaaggtgccacgtttcaag
cccggcaaaggtttgaaggatgctttgaattaa
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