Limnohabitans sp. INBF002: LINBF2_22960
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Entry
LINBF2_22960 CDS
T09962
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03030
DNA replication
limi03430
Mismatch repair
limi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LINBF2_22960
03430 Mismatch repair
LINBF2_22960
03440 Homologous recombination
LINBF2_22960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limi03032
]
LINBF2_22960
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_22960
Enzymes [BR:
limi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LINBF2_22960
DNA replication proteins [BR:
limi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LINBF2_22960
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LINBF2_22960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DEDDh_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
BDU54061
LinkDB
All DBs
Position
complement(2305097..2305756)
Genome browser
AA seq
219 aa
AA seq
DB search
MISFLSPLQWWRSLKREWLIYHLGLPEFRFMFDAPPPNEWVSLDCETTGLNVNSDEIISI
GAVRIVGNKIMTSERFEVLVRPERGVSADSVRIHRLRGQDVAQGLTADEAMKQLLRFIGS
RPLVGYFLEFDVAMLNRAIWPLLGQGLPQPKIEVSAMYYDHKFRQMLPYEQQTNPNIDLR
FATLMSDLDLPVREAHDALNDAVMAAMAFIKLRQLRSGG
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgtttctctctcctttgcagtggtggcgctcgctcaagcgtgagtggctgatt
tatcacctcggcttgcctgagtttcgtttcatgtttgacgccccacctccgaacgaatgg
gtgtcgctcgattgcgaaaccacaggtctgaatgtcaactcagatgaaatcatctccatc
ggggcggttcgcattgtgggcaacaaaatcatgaccagcgagcgctttgaagtgctggtg
cgccccgagcgcggcgtgtctgccgacagcgtgcgtattcaccgcttgcgtggtcaagac
gtggcgcaaggcttgaccgccgatgaagccatgaagcaactcctgcgcttcattggcagc
cgccccttggtgggctactttttagagttcgatgtggccatgctcaatcgagcgatctgg
ccgctcttgggtcaaggcttgcctcagccgaagatcgaagtctcggcgatgtactacgac
cacaagtttcgccagatgctgccgtatgaacagcagaccaaccccaacatcgatttgcgt
tttgccacgttgatgtcggatttagatttgcctgtgcgtgaggcgcacgacgctttgaat
gacgcggtgatggcggccatggcgttcattaagttgcgtcagttgcgttctggggggtaa
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