Limnohabitans sp. INBF002: LINBF2_23310
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Entry
LINBF2_23310 CDS
T09962
Symbol
priA
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LINBF2_23310 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_23310 (priA)
Enzymes [BR:
limi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LINBF2_23310 (priA)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LINBF2_23310 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_C
PriA_3primeBD
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_22
ADDB_N
SWI2_SNF2
AAA_19
T2SSE
PhoH
Ddi2_HDD
AAA_7
Bac_DnaA
DUF5817
zf-HYPF
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BDU54096
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All DBs
Position
2354289..2356391
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AA seq
700 aa
AA seq
DB search
MSHQISVMVHTPAHSGIGGALTYESGTAHTAGTLVRVPLGSRELLGVVWGGAGPHADSGE
TAPMQLRAIASVLEGLTPLNAHWRQLVQFAASYYQRSAGEVALAALPSQLRDLSAEQWAR
RLKRKPKVVAAYEGATQTIPEPTDEQAQVLADIATHKGPFLLFGNTGSGKTEVYLRAAQA
VLEHNPQAQILVMVPEINLTPQLEERFRARFCPQWGADCLVSMHSSLTPAQRLKNWLAAH
SGEARIVLGTRMAVFASMPHLHLIVVDEEHDPSYKQQEGARYSARDLAIYRGQLEGAKVI
LGSATPSLESWHHSRPATTSEPAGRYMRLAMPSRVGQGALPLVRRVDMNRQPYKTVFSNH
LLDAMRERVTRGEQILVLLNRRGYAPVLNCNDCGWKSECPHCSAFRVFHKLDRTLRCHHC
GFTQPVPRACPSCGNLDISPLGRGTEQLEEHLTELLADVRRPDGEPIRIARIDADSTRLK
GELERQLAEVHAGAVDVLVGTQMIAKGHDFRRVTLVAALNTDGALFSSDFRAPERLFSLL
MQAAGRAGRDATMNLVSPCEMWVQSHHPQHPLFEALKQHDYPAFAEQQLKEREQATLPPF
SFQALVRAEARSQEAAQGFLNAAREAGAALADELLVDLYPAVPMTIQRVANIERAQMLIE
CTSRKALQHFLAHWQADLHSLRSAHRQVIRWAVDVDPLAI
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaccaaatttcagtgatggtccacacccccgcgcacagcggcatcggtggcgca
ctcacgtacgaaagcggcacagcgcacacagccggcactttggtgcgggtgccactgggc
agccgagagctgttgggcgtggtgtggggcggggcggggccgcacgccgacagcggcgaa
acagcccctatgcagctgcgcgccatcgccagcgtgttggaaggcctcacgccgctcaac
gcccattggcgccagctggtgcagtttgccgccagttattaccaacggagtgcaggcgag
gtggccttggccgcactgcccagccagctgcgtgatctgagcgctgaacaatgggcacgc
cgcctcaaacgcaaacccaaagtggtcgcggcctatgagggcgccacacaaaccattcct
gaacccaccgacgaacaagcccaagtgctggctgacattgccacccacaaaggcccgttc
ttgttgtttggcaacaccggcagcggcaagaccgaggtgtatttgcgtgccgcgcaagcc
gtgctggaacacaacccgcaagcgcaaattttggtgatggtgccggagatcaacctcacg
ccacagttggaagaacgctttcgcgcccgcttttgcccgcagtggggcgccgactgtttg
gtgtccatgcacagcagcctcacgcccgcgcagcgcctgaaaaactggctggccgcgcac
agcggcgaggcgcgcattgtgttgggcacgcgcatggccgtgtttgcgtccatgccgcat
ttgcacctcatcgtggtcgatgaagaacacgaccccagttacaaacaacaagaaggcgca
cgctactcggcacgcgacctggccatctaccgcggccagctcgaaggtgcgaaagtcata
ttgggttcagccacaccctcgctggaaagctggcaccacagccgccccgccaccacctca
gaacccgcaggccgctacatgcgtttggccatgccttcacgcgtgggccaaggtgccttg
cctttggtgcgccgcgtggacatgaaccgccagccatacaaaaccgtgttctccaaccac
ctgctcgacgccatgcgcgaacgcgtgacgcgtggcgaacaaatcttggtgttgctcaac
cgccgtggctacgcgcccgtgctcaactgcaacgactgcggctggaaaagcgaatgccca
cactgcagcgcgtttcgcgtgttccacaaacttgaccgcacgctgcgctgccaccactgc
ggcttcacacagcccgtgccacgcgcgtgcccgagctgcggcaatttagacatcagccct
ttgggccgcggcaccgaacagctcgaagaacacttgaccgagttgctggccgatgtgcgc
agacctgacggcgagcccattcgcatcgcccgcatcgacgccgacagcacccgcctcaaa
ggtgagctagagcgccagctggccgaagtccacgcaggcgcggtggatgtgttggtgggc
acgcaaatgattgccaagggccacgacttccggcgcgtcaccttggtggcggcactcaac
acggatggcgctttgttttcgagcgatttccgagcgcctgagcgtttgttcagtttgctc
atgcaagccgccggacgggcagggcgcgatgccacgatgaatttggtcagcccctgcgaa
atgtgggtgcaaagccaccacccgcagcaccctttgtttgaagcgctcaagcagcacgac
tatcccgccttcgcagagcaacagctcaaagaacgcgagcaagccaccttgccgcccttc
agcttccaagccttggtgcgcgcagaggcacgcagccaagaagccgctcaagggttttta
aatgccgcacgcgaagccggtgccgcactggccgatgagttgttggtggatttgtatccc
gctgtgcccatgacgattcagcgcgtggccaacatcgagcgtgcacaaatgttgatcgaa
tgcacctcacgcaaagcactgcaacatttcttggcgcattggcaggctgatctgcacagc
ctgcgcagcgcccatcggcaggtgatccgttgggcagtcgacgtggacccgctggcgatt
taa
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