Limnohabitans sp. INBF002: LINBF2_23770
Help
Entry
LINBF2_23770 CDS
T09962
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi02020
Two-component system
limi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LINBF2_23770 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LINBF2_23770 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
limi03021
]
LINBF2_23770 (rpoN)
Transcription machinery [BR:
limi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LINBF2_23770 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_5
PSD2
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BDU54142
LinkDB
All DBs
Position
complement(2409463..2411034)
Genome browser
AA seq
523 aa
AA seq
DB search
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEIEQMLDENPFLDKEFEEAPREEFG
LDKADAPTRDEEVEPVREVPSLDGGMSEISVDNTASDTEPSVDGVAESWDGDGSVEFSAD
DSEWGGDAPASNNNNTADSDTADATELARMQESLTSHLHRQALALRLSPTDQAALRYLIE
NLNDDGYLEDTLRSLAEGLGGDDEEEIEELEHRFQVALSLLQSLEPVGVGARDLAECLTL
QLKALTPKGEEALQIRDTAILMCKQPMEMLAKRDFKRLAVIVGDSEANVKVAIALIGRLE
PKPGRRFADVERHVVVPDVLVTRVGKSTMTPKFKVALNPDVMPRLRVHDIYANALRGGKG
EAHAGLQQRLQEARWFIKNIQQRFDTILRVSNAIAERQKNFFIHGELAMRPMVLREIAEE
LGLHESTISRVTTNKYMSTPFGTFELKYFFGSGLETDSGNNASSTAVRALIKQFVASENP
KKPLSDNQLSEMLKEQGIECARRTVAKYREALRIAPTTLRKAL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggcttatcactccgcgtctcccaacatctggcgctcacgccgcagttacag
cagtcgatccgactgttgcagttgtccaccttggagttgagccaagagattgagcaaatg
ctcgacgagaacccgtttctcgacaaagagtttgaagaagcgccgcgcgaagagtttggc
ctcgacaaagccgatgcccctacccgtgacgaagaagtcgagcctgtccgcgaagtgcca
tcgctcgatggcggcatgtctgaaatcagcgtggacaacacggccagtgacaccgaaccc
agcgtggatggcgtggccgaaagctgggatggtgatggcagcgtggagttctcagccgac
gattctgagtggggcggcgacgcacccgccagcaataacaacaacaccgccgacagcgac
accgcagacgccaccgagctggcgcgcatgcaagagtcgctcacctcgcatttgcaccgt
caagctttggctttgcgcttgagccctactgaccaagcggccttgcgctacttgattgaa
aacctcaacgacgacggctacctcgaagacacgctgcgcagcttggccgaaggtttgggt
ggtgacgatgaagaggaaattgaagaactcgaacaccgcttccaagtggccttgtcgctg
ctgcaaagcctagaacctgtgggtgtgggcgcgcgtgatttggccgagtgtttgacgctg
caactcaaagccttgacgcccaaaggcgaagaagctttgcagattcgcgacaccgccatt
ctcatgtgcaagcagcccatggagatgttggccaagcgcgatttcaaacgcttggcggtc
atcgtgggtgacagcgaagccaatgtcaaagtggccattgccctgattggccgtctagag
cccaagcccggccgtcgttttgccgatgtggagcgccatgtggtggtgcctgatgtgttg
gtgacgcgcgtgggcaagtcgaccatgacgccaaaattcaaagtggcattgaaccccgat
gtgatgcctcgcttacgtgtgcacgacatctacgccaatgccctcagaggcggcaagggc
gaagcgcatgcgggcttgcaacagcgtttgcaagaagcgcgttggttcatcaagaacatc
caacaacgctttgacaccatcttgcgtgtgagcaatgcgattgctgagcgccagaaaaac
ttcttcatccacggcgaactcgccatgcgcccgatggtgctgcgcgagattgccgaggag
ctggggctgcacgaatccaccatcagccgcgtgacgaccaacaaatacatgagcacccct
tttgggacgtttgagctcaagtatttcttcggttcagggttggagacggacagcggcaac
aacgcctccagcacggcggtgcgcgcgctcatcaagcaatttgtggcgagcgaaaacccc
aaaaagccgctgtcggataatcagctctccgaaatgctcaaagagcaaggcattgagtgc
gcccgccgcaccgtggccaaataccgtgaggcgctgcgcattgcgcccacgacattgcgc
aaggccctctga
DBGET
integrated database retrieval system
