Limnohabitans sp. INBF002: LINBF2_23990
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Entry
LINBF2_23990 CDS
T09962
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03030
DNA replication
limi03430
Mismatch repair
limi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LINBF2_23990 (holA)
03430 Mismatch repair
LINBF2_23990 (holA)
03440 Homologous recombination
LINBF2_23990 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limi03032
]
LINBF2_23990 (holA)
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_23990 (holA)
Enzymes [BR:
limi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LINBF2_23990 (holA)
DNA replication proteins [BR:
limi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LINBF2_23990 (holA)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LINBF2_23990 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
BDU54164
LinkDB
All DBs
Position
complement(2433581..2434651)
Genome browser
AA seq
356 aa
AA seq
DB search
MQVASAQFANHLQTQASKGLRSLYTFHGDEPLLQQEALDALRNTAREQGYTERNVYTVAG
AHFDWGEVLAAGGSMSLFADKQLIEIRIPSGKPGKEGSTALQQIAELAVGNDSTLTVVLL
PRLDKATKSSAWFSALENNGISVQIDPIERHALPTWIAQRLGAQQQRVAAGEAGQHTLQF
FAERVEGNLLAAHQEIQKLGLLYPAGELSFEQVERAVMNVARYDVFKLSEAVLSGQPLRV
QRMLDGLKAEGEAEVLVHYTLAEEIRALKRVKDAVASGKALPMALREQRIWGPRERLFER
VLPRLSVGMLEKLLQSAHQVDGIVKGLKTPEWPADNWQALHRLAMRLCRACMPRNA
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcgccagcgctcaatttgccaatcacctgcaaacgcaggcgagcaaaggcttg
cgcagcctctacacctttcatggggatgagcctctgttgcagcaagaagcgctagatgct
ttgcgcaatactgcacgcgaacagggctacaccgagcgcaacgtgtacaccgtggctggt
gcgcattttgattggggcgaagtgttggcggcaggcggttccatgagcttgtttgccgat
aagcaactcattgaaattcgcattccttcgggcaagcccggcaaagaaggcagcacagct
ttgcagcaaattgctgagttggctgtgggcaatgacagcacgttgaccgtggtgctgttg
ccgcgcttagacaaagcgaccaaaagttcggcttggttcagtgccttagaaaacaacggc
atcagcgtgcagattgatccgattgaacgccacgctttgcccacgtggattgcgcaacgt
ttgggtgcgcagcagcaacgcgtcgccgctggcgaagcgggtcaacacaccttgcaattt
tttgctgaacgtgtggaaggcaacttgctggcagcgcaccaagaaattcaaaagcttggc
cttctgtaccccgcaggcgagttgagctttgagcaagtcgaacgcgcggtgatgaacgtg
gcgcgttatgacgtgttcaaactctcagaagctgtactcagcggtcagccgctgcgcgtg
caacgcatgctcgatggcttgaaggcggaaggtgaagcggaggtgttggtgcactacacg
ctggccgaagaaatccgtgccttgaagcgtgtcaaagacgccgtggcatcgggcaaggcc
ttgcccatggccctgcgcgaacagcgcatttggggcccgcgcgagcgtttgtttgaacgc
gtgctgccacgcttgagcgtgggcatgctcgaaaaattgttgcagtcagcacaccaagtt
gacggcattgtcaaaggcttgaaaacaccagaatggcctgccgacaactggcaagccctg
caccgtttggccatgcgtttgtgccgtgcttgtatgccgcgcaacgcttaa
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