Limnohabitans sp. INBF002: LINBF2_24120
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Entry
LINBF2_24120 CDS
T09962
Symbol
fadD
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi00061
Fatty acid biosynthesis
limi00071
Fatty acid degradation
limi01100
Metabolic pathways
limi01212
Fatty acid metabolism
limi02024
Quorum sensing
limi04146
Peroxisome
Module
limi_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
LINBF2_24120 (fadD)
00071 Fatty acid degradation
LINBF2_24120 (fadD)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
LINBF2_24120 (fadD)
09145 Cellular community - prokaryotes
02024 Quorum sensing
LINBF2_24120 (fadD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
limi01004
]
LINBF2_24120 (fadD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
limi04147
]
LINBF2_24120 (fadD)
Enzymes [BR:
limi01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
LINBF2_24120 (fadD)
Lipid biosynthesis proteins [BR:
limi01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
LINBF2_24120 (fadD)
Exosome [BR:
limi04147
]
Exosomal proteins
Exosomal proteins of breast milk
LINBF2_24120 (fadD)
Exosomal proteins of breast cancer cells
LINBF2_24120 (fadD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Phenol_monoox
DUF1576
Motif
Other DBs
NCBI-ProteinID:
BDU54177
LinkDB
All DBs
Position
complement(2444793..2446469)
Genome browser
AA seq
558 aa
AA seq
DB search
MKPWLSAYPEGVPAEIDITAYSSLVDLMQESFRQYGDRTAFSFLGKRLTYKELDRLSQVF
AAYLQSLGLVFGDRVAIMLPNVLQYPIAVAAVLRAGFVVVNINPLYTARELEAQLKDSDA
KAIVVLENFGATLQECLARTPVKHVVLCAMGDRLGLLKGVLVNHVVRKVKKMVPAFELPT
AVRFNDALAAGERCTLTSPEIHGDDLAVLQYTGGTTGVAKGAELLHRNVMANMLQASAWF
QPALKRIPANEIPTFICPLPLYHIFAFTLNIMACMRMGGCSVLIPNPRDLPAVFKEISKH
RFHVFPAVNTLFNALANHPDFNKVDWSHLVVSVGGGMAVQGPVAKLWLEKTGCPICEAYG
LSETSPAASGNPVTNKAFNGSIGVPLPSTDMKIIDDDGNEVPVGTPGEIAIRGPQVMAGY
WQRPDETARVMTADGFFKSGDVGVMDERGYFRIVDRKKDMILVSGFNVYPNEVEEVVAGM
PGVMECAVIGIPDERSGEAVKLVVVKKDAALTETQVLEHCRHNLTGYKMPRVVEFRTELP
KTPVGKVLRRELRDKTPA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttggttaagcgcctacccagagggtgtgcctgcagaaattgacatcaccgcg
tacagctcgttggtagatttgatgcaagaaagctttcgccaatacggcgatcgcacagct
ttcagtttcttgggtaagcggctgacctataaagagcttgaccgtttgagccaagttttt
gcagcctatttgcaaagcttaggcttggtatttggtgaccgggtggccatcatgctgccc
aacgtgttgcagtaccccatcgctgtggcggccgtgcttcgcgcgggttttgtggtggtc
aacatcaacccgctttacaccgcccgcgagttggaagcccagctcaaagactcagatgcc
aaagcgatcgtggtgctcgaaaacttcggcgcgactttgcaagagtgtttggcccgtacc
cctgtgaagcatgtggtgttgtgtgcgatgggcgaccgcttaggtttgctcaaaggcgtg
ttggtcaaccatgtggtgcgcaaagttaaaaaaatggtgcctgcgttcgagctgcccaca
gccgttcgattcaacgatgcattagcggccggcgagcgttgcacattgacgtcccctgag
atccatggcgatgacttggcggtgttgcaatacaccggcggcaccacaggcgtggccaaa
ggggctgagctgttgcaccgcaatgtgatggccaatatgttgcaagcgtcggcgtggttt
cagcctgcactcaagcgcattccagccaacgaaattccaactttcatttgcccgctgccg
ctgtatcacatcttcgcgttcacgctcaacatcatggcgtgtatgcgcatgggcggctgc
tcggtgctcatccccaacccgcgtgatttgcccgcagtgttcaaagagatcagcaagcat
cgcttccacgttttccctgcggtgaacaccttgttcaacgccttggccaaccaccctgat
ttcaataaagtagattggtcgcacttggtggtgtccgtgggtggcggcatggccgtgcaa
ggcccagtcgccaagttgtggctggagaaaaccggctgccccatttgcgaagcctacggt
ttgtcagaaaccagccctgccgccagcggtaaccctgtgaccaacaaagccttcaacggc
tcaattggtgtgccattgcccagcactgacatgaagatcatcgacgatgacggcaacgaa
gtgcctgtgggaacgcctggtgaaatcgctattcgtggcccacaagtgatggcgggttac
tggcaacgtcctgacgaaactgcacgcgtcatgacggcggatggcttcttcaaatcgggt
gatgtgggcgtgatggacgagcgcggctactttcgcatcgtggaccgcaagaaagacatg
atcttggtcagtggcttcaatgtctatcccaacgaggtggaagaggtggtggccggtatg
cctggcgtcatggagtgcgcggtgattggcattcccgacgaacgctcaggcgaagccgtc
aaactggtggtggtcaagaaagatgctgccttgaccgaaacgcaagtgctggaacattgc
cgccacaacctcacgggctacaaaatgccacgcgtggtggagttccgcacagagttgccc
aaaactcccgtgggcaaagtgctgcgccgagaactgcgcgacaaaacccctgcatga
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