Limnohabitans sp. INBF002: LINBF2_24170
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Entry
LINBF2_24170 CDS
T09962
Symbol
trmU
Name
(GenBank) tRNA-specific 2-thiouridylase MnmA
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
LINBF2_24170 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
limi03016
]
LINBF2_24170 (trmU)
Enzymes [BR:
limi01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
LINBF2_24170 (trmU)
Transfer RNA biogenesis [BR:
limi03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
LINBF2_24170 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_C
tRNA_Me_trans_M
NAD_synthase
ThiI
QueC
Asn_synthase
Arginosuc_synth
AraC_binding
ATP_bind_3
DUF7411
Motif
Other DBs
NCBI-ProteinID:
BDU54182
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Position
2450055..2451182
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AA seq
375 aa
AA seq
DB search
MANNKRVVVGLSGGVDSAVSAYLLKQQGYDVVGIFMKNWEDDDDSEYCSSNIDFVDAAAV
ADVLGIEIEHVNFAAEYKDRVFAEFLREYQGGRTPNPDILCNAEIKFKAFLDHAMRLGAE
KIATGHYCRVREINGEFQLLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTEVRRIA
DEIGLPNAKKKDSTGICFIGERPFREFLNRYIANEPGPIKDERGRKIGTHVGLSFYTLGQ
RQGLGIGGLKEKGAQRGGGEHQPWFVARKDLATNTLYVVQGHDHPWLLYGSLHADDLSWC
APHAPTPGRYAAKTRYRQADAPCELSYNTEGELVLAFDDPQWAVTPGQSAVLYDGEVCMG
GGVIASAAALNTTLA
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataacaaacgtgtggtggtgggcttgagcggcggcgtggattcggccgtcagt
gcctatctgttgaagcaacaaggctacgacgtcgtcggcatcttcatgaaaaactgggaa
gacgatgatgacagcgagtactgttcgtccaacatcgacttcgtggacgccgctgccgtg
gctgacgtgcttggcattgagattgaacacgtcaactttgccgccgaatacaaagaccgc
gtgttcgccgagttcttgcgcgaataccaaggcggccgcacgcccaaccccgacattttg
tgcaacgctgaaatcaagttcaaagcgttcttagaccacgccatgcgcttgggcgcagaa
aaaattgccaccggccattactgccgtgtgcgtgaaataaatggcgagtttcaactgctc
aaaggcttggaccccagcaaagaccaaagctatttcttgcaccgattgaaccaggcacag
ttgtccaaaaccttgttccccgtgggcgagctgcacaaaaccgaagtgcgccgcattgcg
gatgaaattggtttgcccaacgccaagaaaaaagactccaccggcatttgcttcatcggc
gaacgccctttccgtgagtttttaaaccgctacatcgccaacgagcccggccccatcaaa
gacgagcgtggccgcaagattggcacgcatgtgggtttgagtttttacacgcttggtcaa
cgccaaggcttgggcattggtggcctcaaagaaaaaggcgcacagcgcggtggcggtgaa
catcagccctggtttgtggcccgcaaagacttggccaccaacaccttgtatgtggtgcaa
ggccatgaccacccttggttgctttacggctcgctgcacgccgacgacctgagctggtgc
gcccctcacgcgccaacacccggacgctacgcagccaaaacacgctatcgccaagccgat
gccccgtgcgagttgagctacaacacagaaggcgagctggtgctcgcctttgatgaccct
cagtgggccgtcacacccggccaatcggctgtgttgtatgacggtgaggtgtgtatgggc
ggcggggtcattgccagcgctgcagcgctgaacacaaccctcgcctaa
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