Limnohabitans sp. MORI2: LMORI2_04470
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Entry
LMORI2_04470 CDS
T11141
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
limm Limnohabitans sp. MORI2
Brite
KEGG Orthology (KO) [BR:
limm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
limm03016
]
LMORI2_04470
Enzymes [BR:
limm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LMORI2_04470
Transfer RNA biogenesis [BR:
limm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LMORI2_04470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BDU57465
LinkDB
All DBs
Position
complement(433352..435418)
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AA seq
688 aa
AA seq
DB search
MYALFEEAGKFQTGRILSEAESSAQIELESGKRVKVKAANLLLKFEKPSPADLMRDAQAL
SPSIELDLAWEFAPEDEFGFADLAREYFSAQATLTEQTAALFRLYDAPHYFRRAGKGRFK
KASAEVIAQALAAIEKKKQIQAQIESWATELGQGTCPEPIRTQLYKILFKPDKNAPEYKA
VVEAARATQTAPLALLQKAGAITSAYQFHWQRFLFDNFPKGTGFPTLQAPAIADELPLAN
VQAYSIDDSQTTEIDDALSVQGLGTGTVTLGVHIAAPALALKPGDAIDQLGRQRLSTVYM
PGYKITMLPDDVVQTYTLQEGRDCPAVSLYATFDEATLALQHTETRVERVPIAANLRHDQ
LDAIVTDAWLNDDTFTHAADVTEPAMPRAQLAFLFRLAKHLKAQREVVRGKPETFNRPDY
NFRLVGNEGREPTGQEQVHISIRQRGAPLDLMVAEAMILANSTWGQWMAELGVPGIYRSQ
ASLLPGVKVRMGTKALPHAGIGVPSYAWSTSPLRRYTDLVNQWQIMACAKHGSTAALAAP
FKPKDAELFAIISAFDGAYGAYNAYQNGMERFWTLQYLKQNNITELSATIFKAFPGQPPM
ARADDLPLVLPVFGGGDLPRGAHVQLRLSEIDDISLDISGQLLHVLEVDAPASTEEADMS
DDEDDSAAGPIALAMDVNEAPATEGNAA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcattgtttgaagaagctggaaaattccagacgggccgcatcctttctgaagct
gaaagttcggcccaaattgagctggaatccggcaaacgggtcaaggtcaaggccgctaat
ttgttgctcaagtttgagaagccctcgcctgccgacctcatgcgcgatgcgcaagccttg
agcccatccatcgagctcgatctggcctgggagttcgcccccgaagacgagtttggcttt
gccgatctcgcccgcgaatacttcagtgcgcaagccacactcaccgaacaaactgcggcg
ctgtttcgtttgtacgacgcaccgcattactttcgtcgcgcaggcaaagggcggttcaaa
aaagcctctgccgaggtgattgcccaagcgcttgccgcgatcgaaaagaaaaaacaaatc
caagcgcaaattgagagttgggcgactgagttaggccaaggtacatgccctgaacccatc
cgcacgcaactctacaaaatcttgttcaagcccgacaagaatgcgcctgaatacaaagcc
gtggtcgaagccgcgcgcgccacccaaactgcgccgctcgcactgctgcaaaaagcaggc
gccatcacctcggcctaccagttccattggcaacgctttttgtttgacaactttccaaag
ggcacgggctttcccactttgcaagcaccggccattgcggacgaattgccactggccaat
gtgcaggcctactcgatcgacgactcacaaaccaccgagattgacgacgccttgtcggtg
caaggcttgggcactggcacggtcacactgggtgttcacatcgctgcacctgcactcgct
ttgaaaccgggcgatgccattgaccaactcggtcgccagcgtttgtccaccgtctacatg
ccgggctacaaaatcaccatgctgcccgacgatgtggtgcaaacctacaccttgcaagaa
ggtcgcgattgccccgccgtgtcgttgtacgccacatttgacgaggccacactggcgttg
caacacaccgagacacgcgtggagcgtgtccccattgcggccaacttacgccacgaccaa
ctggatgccatcgtcaccgacgcttggttgaacgacgacacattcacgcatgccgctgat
gtgactgaacctgccatgccccgcgctcaactggcatttttattccgcttggccaaacac
ctcaaagcccaacgcgaagtggtgcgcggcaagcctgaaacctttaaccgccccgactac
aacttccgcttggtcggcaacgagggccgtgagcccacaggccaagaacaagtacacatc
agcatccgccagcgcggtgctcctttggatttgatggtggctgaagccatgatcttggcc
aacagcacctgggggcaatggatggctgagctgggtgtacccggcatttaccgtagccaa
gccagcttgctgccaggcgtcaaagtccgtatgggcaccaaggcgttgccccatgcgggc
attggtgtgccgagctatgcgtggagcacctcaccgttgcgccgctacaccgacctcgtc
aaccaatggcaaatcatggcgtgtgccaaacacggcagcaccgctgcactggccgcgccc
ttcaaacccaaagatgcagaactctttgccatcatctcagccttcgatggcgcttatggc
gcgtacaacgcctaccaaaacggcatggaacgtttttggacactgcagtacctgaaacaa
aacaacatcaccgaactcagcgccaccatcttcaaagccttccctggccagcctccgatg
gcacgcgctgatgacttgcctttggtgttgcccgtcttcggtggtggcgatttgccacgc
ggtgcccatgtgcaactgcgcttgagtgagattgacgacatcagcctcgacatcagcggc
caactgctgcacgtgctggaggtcgatgcgcccgccagcaccgaagaagccgacatgagt
gacgacgaggacgacagcgccgccggccccattgctttggccatggatgtgaacgaagcg
ccagccacagaaggaaacgcggcatga
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