Limnohabitans sp. MORI2: LMORI2_10970
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Entry
LMORI2_10970 CDS
T11141
Symbol
nitA
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
limm Limnohabitans sp. MORI2
Pathway
limm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMORI2_10970 (nitA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
limm03021
]
LMORI2_10970 (nitA)
03019 Messenger RNA biogenesis [BR:
limm03019
]
LMORI2_10970 (nitA)
Transcription machinery [BR:
limm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LMORI2_10970 (nitA)
Messenger RNA biogenesis [BR:
limm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LMORI2_10970 (nitA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
Spore_III_AA
AAA_19
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDU58115
LinkDB
All DBs
Position
complement(1102495..1103757)
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEALEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRIPKDGERYFALTKLDKVN
NDLPENNKHKVMFENLTPLFPREQMKLEREIKGEENITGRIIDIIAPIGKGQRALVVAPP
KSGKTVMMQHIAHAISANYPDAHMMVLLVDERPEEVTEMQRSVKAEVIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPAIQL
NRSGTRREEMLLPPEILQKTRILRQFMYNMDEIESMEMVLKSMKATKSNVEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgaacgaactcaaggcactgcacgtgtctgaagtgctgaaacaagctgaagcc
ctcgaaatcgaaaacacgggccgcatgcgcaagcaagagctgatgtttgccatcatcaaa
aagcgtgccaaagcgggcgaacaagtgtttgccgacggcgtgctcgaaatcttgcccgac
ggctttggcttcttgcgtagccccgacaccagctacaccgcatcgacagacgacatctac
atcagccccagccaagtgcgccgctttaacctgcacaccggcgacatgattgaaggcgaa
gtgcgcatcccaaaagatggcgagcgttacttcgctttgaccaaactcgacaaggtcaac
aacgacctgcctgagaacaacaagcacaaggtcatgtttgaaaacttgaccccgctcttc
ccgcgcgaacagatgaagttggaacgcgaaatcaaaggcgaagaaaacatcaccggccgc
atcatcgacatcattgcgcccatcggcaaaggccaacgcgccttggtcgtcgcaccgccc
aagagcggtaagaccgtgatgatgcagcacatcgcccacgccatttcggccaactacccc
gacgcccacatgatggtgttgctggtggacgagcgccctgaagaagtgacagaaatgcag
cgctcggtcaaagccgaagtgattgcctcgacgtttgacgaacccgccgcacgccacgtg
cacgtggctgagatggtgatcgaacgcgccaagcgtttggtcgaactgaaaaaagatgtg
gtcatcttgctcgactccatcacccgccttgcccgcgcttacaacaacgtcgtgccttca
tcgggcaaagtgctgtcaggcggtgtggactccaacgccttgcaacgccccaagcgcttc
tttggtgcagcccgcaaagtagaagaaggtggctcactcaccatcatcgccacggccttg
gtcgacaccggcagtcgcatggacgaagtgatctttgaagaattcaaaggcacaggtaac
tgtgaaattcacctcgaccgccgcttgtacgaaaagcgtgtgttcccagcgattcaactc
aaccgcagcggcacccgccgcgaagagatgttgttgccacctgagatcttgcaaaagacc
cgcatcctgcgccagttcatgtacaacatggacgagatcgaatccatggaaatggtgttg
aagagcatgaaggcgaccaagtccaacgtcgagttcttcgacatgatgcgtcgcggcggt
taa
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