Limnohabitans sp. MORI2: LMORI2_15780
Help
Entry
LMORI2_15780 CDS
T11141
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
limm Limnohabitans sp. MORI2
Brite
KEGG Orthology (KO) [BR:
limm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
limm03009
]
LMORI2_15780 (rlmD)
Enzymes [BR:
limm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LMORI2_15780 (rlmD)
Ribosome biogenesis [BR:
limm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LMORI2_15780 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_31
TRAM
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
BDU58596
LinkDB
All DBs
Position
complement(1702923..1704317)
Genome browser
AA seq
464 aa
AA seq
DB search
MTDTTTEKQWPDNALTIESMDLEAQGVGHRADGKVVFVDGALPFEVVRANVHRKKDNWEK
ASLLEVLHESSQRVTPGCPHFGLHAGACGGCKMQHLDASAQIAVKQRALEDNLWHLGKVK
PETILRPIQGPAWGYRFRARLSVRYVVKKGEVLVGFHERKSRYVADMRQCPILPPHVDAM
LMPLRQLIGSMDARETLPQIELACGDHVTALVLRHMEPLSAHDMQALRDFAAKHNVQWWL
QSKGPDTVCLMEGALGEPLSYALPEFGITMPFKPTDFTQVNPHINRVLVTRALRLLEVQP
TERVIDWFCGLGNFTLPLATLAREVLGIEGSEALVTRSGENYVFNQANRDKPLAPTSFVA
RNLFEMTPELLRQDGAADKWLVDPPREGAFSLVQALAEMHQQPELRQGWTPPKRIVYVSC
NPSTLARDAGVLVNAAGYRISSAGAVNMFPHTAHVESMAVFDLV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacaacgacagaaaaacagtggcctgacaacgcgctcaccatcgaatcgatg
gacctagaagcgcagggcgtgggtcaccgcgccgatggcaaagtggtgtttgtcgacggt
gccttaccctttgaggtggtgcgcgccaatgtgcaccgcaaaaaagacaactgggaaaaa
gcatcgctgctcgaagtgctgcatgagtcctcgcagcgcgtcacgcctggttgccctcac
tttggcttgcatgcgggtgcatgtggcggctgcaagatgcagcacttggatgcttcagca
caaatcgcggtcaaacaacgcgccctagaagacaacttgtggcacttaggcaaagtgaag
cctgagaccattcttcgccccattcaaggccctgcatggggctatcgtttccgcgcccgt
ttgtcggtgcgctatgtggtgaaaaagggcgaagtgttggtggggttccatgagcgtaag
agccgctacgtggctgatatgcgccagtgccccatcttgccgccgcatgtcgatgccatg
ctcatgccattgcgtcagctgattggcagcatggatgcgcgtgagaccttgccgcaaatt
gaattggcttgtggtgaccatgtgacggctttggtgctgcgccacatggagcccttgagt
gcacacgacatgcaagctttgcgcgacttcgccgccaagcacaacgtgcagtggtggctc
cagtccaaaggcccagacaccgtgtgtctgatggagggcgctttgggtgagccgttgtct
tacgccttgcctgaatttggcatcacgatgccgttcaaaccgactgacttcacgcaagtc
aatccgcatatcaaccgtgtgttggtcacacgcgctttgcgattgcttgaggtgcagccg
actgagcgtgtgatcgactggttctgcggcttgggtaacttcaccttgcctttggcaacg
cttgcacgcgaggtcttaggcattgagggcagcgaggctttggtgacgcgctctggcgag
aactatgtgttcaaccaagcgaaccgagacaagcctttggcgccgaccagctttgtcgcg
cgtaacttgtttgaaatgacgcccgagttgctgcgccaagatggcgcggcagacaagtgg
ttggtggatccgccgcgtgaaggcgctttctcattggtgcaagcgctggccgagatgcac
cagcagccagaacttcgtcagggttggacaccacccaagcgcattgtgtatgtgagctgc
aacccgtctactttggcgcgtgatgcgggtgtgttggtgaatgctgcaggctatcgcatt
tcatcggcaggtgcggtgaatatgttcccgcacacggcccatgtggagagcatggctgtg
tttgatttggtttaa
DBGET
integrated database retrieval system
