Limnohabitans sp. MORI2: LMORI2_17340
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Entry
LMORI2_17340 CDS
T11141
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
limm Limnohabitans sp. MORI2
Pathway
limm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMORI2_17340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limm03019
]
LMORI2_17340
Enzymes [BR:
limm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMORI2_17340
Messenger RNA biogenesis [BR:
limm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMORI2_17340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDU58752
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All DBs
Position
1857682..1859505
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AA seq
607 aa
AA seq
DB search
MKFEDLNLAPAIQKAVAEQGYETPTPIQQQAIPAVLAGHDLLAGAQTGTGKTAAFTLPVL
HKLTMSRSKENKFGVYGVRALVLTPTRELAAQVEESVRNYGKYLQLTSTVIFGGVGMNPQ
ISRLKKGVDILVATPGRLLDLQQQGELDLSTVEILVLDEADRMLDMGFIHDVKKILALVP
KDKQSLLFSATFSDEIRELANNLLKDPQSIQVTPSNTTVQRITQVVHPVGRGKKKALLAH
IINEHNWSQVLVFTRTKFGANNVAEFLTKNGISAMALHGNKSQTARTQALAGFKTGEIRA
LVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGSSGEAVSLVSLDEQGFMR
DIEIFTKQQVPVVEVEGFGPEPDEKAEPIAMGRQTLWGGLGKPPGRDVMAAAAKAARSEM
MQRIRDNKAAGGGRGSQGGEGGRAPRPNGHVSRDRMGDRPPRDGERSEALGDRPPRNANR
NARGGNRPQGHGGGQGGQRPPRQFDNRGPRQDGPREPRHHDDDDFQPRANAHLGTQSGVN
AFGHKTQGGGGRQPDPTRTSIDLMTERKRGGGGGYGRRSGGGGNRSGGGRSGGGRSGGGF
SGGGYGR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagatttaaatttggctccggccatccaaaaagctgtggccgaacagggc
tacgaaacgccaactcccattcagcagcaagccattccagccgttctggctggtcacgat
ttgttggcaggcgcgcaaaccggcacgggtaaaacggccgccttcacactgcctgtgctg
cacaagctcaccatgagccgcagcaaagaaaacaagtttggcgtgtatggtgtgcgcgcc
ctcgtgctgacccccacccgtgaactcgcggcccaagtggaagagtcggtacgcaactac
ggcaaatatttgcaactcacctccaccgtcatctttggtggcgtgggcatgaacccacaa
atctctcgcttgaaaaaaggcgtggacattttggtggctacccctggccgcttgctggat
ttgcagcaacaaggcgagctcgacttgtccactgtcgaaatcttggtgcttgacgaagct
gaccgcatgctggacatgggttttattcacgacgtcaagaaaatcttggccttggtgcct
aaagacaagcaaagcttgttgttctcagccaccttcagcgacgaaattcgtgaactggcc
aacaacctgctcaaagacccacaaagcattcaggtcacgcccagcaacaccacggtgcaa
cgcatcacgcaagtggttcaccctgtgggccgaggcaagaaaaaggccctgctcgcccac
atcatcaacgagcacaactggagccaagtgctggtgttcacacgcaccaagtttggcgcc
aacaatgtggccgagtttttgaccaagaacggcatcagcgccatggcgttgcacggcaac
aagagtcaaactgctcgcacgcaagctttggcaggcttcaagactggcgaaatacgcgcc
ttggtggccaccgacatcgccgcacgcggcattgacattgacgagttgccacacgtggtc
aactacgaaattcccaacatcagcgaagactatgtacaccgcattggtcgcacaggccgc
gcgggctcaagtggcgaagccgtgagtttggtgtcgttggacgagcaaggtttcatgcgc
gacattgaaatcttcaccaaacaacaagtacccgtggttgaagtcgaaggctttggccca
gaacccgatgaaaaagccgaacccattgcgatgggccgccaaaccctgtggggcggccta
ggcaagcccccaggccgcgacgtcatggcggcagcggccaaagccgcacgcagcgaaatg
atgcagcgcatccgcgacaacaaggccgctggcggtggccgtggcagccaaggtggagaa
ggaggcagagccccacgccctaatggccatgtcagccgtgatcgcatgggcgatcgacct
ccacgcgatggtgaacgcagcgaggccttgggtgaccgcccgccacgcaatgccaatcgc
aacgcacgcggtggcaatcgcccgcaaggtcatggcggcggccaaggtggccaacgccca
ccacgccaatttgacaaccgtggtccccgccaagatggccctcgcgagccacgtcaccac
gacgatgacgacttccaacctcgcgccaacgcccatttgggcacccaaagtggcgtgaac
gcgtttggccataagacccaaggtggtggcggtcgtcaacctgaccctacacgcaccagc
atcgacctcatgaccgagcgcaaacgcggtggcgggggtggttatggtcgccgctctggc
ggtggtggcaaccgttctggcggtggccgctcaggtggtggtcgcagcggcggcggtttt
agtggtggcggttacggtcgttaa
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