Limnohabitans sp. MORI2: LMORI2_18020
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Entry
LMORI2_18020 CDS
T11141
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
limm Limnohabitans sp. MORI2
Pathway
limm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMORI2_18020 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limm03019
]
LMORI2_18020 (rhlE_2)
Enzymes [BR:
limm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMORI2_18020 (rhlE_2)
Messenger RNA biogenesis [BR:
limm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMORI2_18020 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
BDU58820
LinkDB
All DBs
Position
complement(1942458..1943900)
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AA seq
480 aa
AA seq
DB search
MTTSFSQLQLAPTLARAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP
LLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIKQYAVHTNLRSAVVFGGMDMK
PQTIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSF
LPKTRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETAATITQQFYSVATDDKYHAL
RQLIKANGMKQAFVFCNSKLGCARLARSLERDGFRTSALHGDKSQDERLKALEGFKQGEV
DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGALGHAISFVSNSDQRL
VGDIEKLLKTKIKLETVTVEQDRSRERREPRESRGESRGESRSERYDSGRSRGGRDSDER
RREVGYVPAPRIKNDPFFDKPYEPTTRSTDAPKVAAPEPLRKSANIKPKRVVAALFKSTT
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttctttctcccaactgcagctggcccccacgctggcacgtgccgtagccgaa
atgggctacgaaaacatgacccccatccaagcccaggccattcctgtggtgctcacaggc
aaggatgtgatgggcgcagcccaaactggcacgggtaaaaccgctgcgttctcgctgccg
ctgctgcaacgtttgctcaaacacgaaaacagctccacctcgcccgcacgtcaccccgtg
cgcgcactggtgctgttgcccacccgcgagctggccgaccaagtggcccagcaaatcaaa
caatacgctgtgcacaccaacctgcgcagcgccgtggtgtttggcggcatggacatgaag
ccccaaaccatcgagctcaaaaaaggcgtcgaggtgctggtggccacccctggccgtttg
cttgaccacattgaagccaaaaacgtcgtgctcaaccaagtggaatatgtggtgctcgac
gaagccgaccgcatgttggacattggcttcttgccagatctgcaacgcatcttgagcttc
ttgcccaagacccgcaccaccttgctcttctcggccaccttctcgcccgagatcaagcgc
ttggccggcagctacttgcaagaccccatcaccatcgaagtggcgcgccccaacgaaacc
gcagccaccatcacgcagcagttttacagcgtggccacagacgacaagtaccacgccttg
cgtcagctcatcaaagccaacggcatgaagcaagcctttgtgttttgcaacagcaaactc
ggctgcgcccgcttggcacgttcgctagagcgcgatggtttccgtaccagcgccttgcac
ggcgacaagagccaagacgaacgcctcaaagccctcgaaggcttcaagcaaggcgaggtc
gatttgttggtgtgtaccgatgtggccgctcgcggcttggacatcaaagacgtgcccgcg
gtgttcaactttgacatcccgttcaacgccgaagactatgtgcaccgcattggccgcaca
ggccgcgccggtgctttgggccacgccatcagctttgtgtcgaacagcgaccaacgcttg
gtgggcgacattgagaagttgctcaagaccaaaatcaaactcgaaaccgtgacggttgag
caagaccgctcgcgtgagcgtcgcgaaccccgtgaatcacgcggtgagtcgcgtggtgaa
tcacgtagcgagcgctacgactcgggccgttcacgcgggggccgcgacagcgacgagcgc
cgccgcgaagtgggctacgtgcccgcaccgcgcatcaagaacgacccgttctttgacaaa
ccctacgagcccacaactcgctctaccgatgcacccaaagtggccgcacccgagccgctg
cgcaagtcggccaacatcaagcccaagcgggtggtggcggctttgttcaagtcgacgact
taa
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