Limnohabitans sp. MORI2: LMORI2_19490
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Entry
LMORI2_19490 CDS
T11141
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
limm Limnohabitans sp. MORI2
Pathway
limm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMORI2_19490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limm03019
]
LMORI2_19490
03009 Ribosome biogenesis [BR:
limm03009
]
LMORI2_19490
Enzymes [BR:
limm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LMORI2_19490
Messenger RNA biogenesis [BR:
limm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMORI2_19490
Ribosome biogenesis [BR:
limm03009
]
Prokaryotic type
rRNA processing factors
LMORI2_19490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
PBP_N
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
BDU58967
LinkDB
All DBs
Position
2094845..2097667
Genome browser
AA seq
940 aa
AA seq
DB search
MKRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAIVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWSAIDGAKGAKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYEQAHQ
FMAHVMPEHAARVKRYSDETPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSVD
VNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVENRL
REALRHDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHVRDTESSALQI
LRIIQEEAMKDNTAAVHAQVPVEVASFLLNEKRTEIAKIEIQQRLNVLLVPNKTLETPNY
KLERLKHDDPRLDKIEASYKMAEEFEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPAHEP
KPAAPAKAHAKAKHADKKEAKSGGLWGWFTSLFSSDDDKKAKPVAGDKKPGERGERRDGR
NANGRGGRGGRGGRGGDRAERGERQEGRNERNAESVEARGERPARGERAERGEGTRNEGR
GPRQDRNRGGRGEPRNTEGQAALDNNASPEAQAEARAKARNERIAREERSENGEQRSEGG
QGRRERSPRGERNDNRRERAPRADENGTQEVLPLDNAAAVEGQAPQTDENGGERRERRSR
DRYGRDRRERGDRAPREEGAAEHADQAHAAEHDHASQEQAPQEAREPREPRQPREPRGER
QDRTPRHTARDEAPQAEPSTQAPARTGMPRIQAFTLPVADMQAVAQSSGLEWINSNPERI
AAVQAAIAAEPKPVHVPRERKPLVIVDEGPLVLVETRKDL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgcttatcaatgcaacccagtcggaagaacgccgcctggccatcgtcgac
ggtcaaaaactgctcgactatgaaatcgaaatcgaaggtcgcgaacaacgcaaaggcaat
atttacaaagccatcgtgacccgcgtcgagccctcgctcgaagcctgctttgtggactac
ggcgaagaccgccacggattcttgcccttcaaagaaatctccaagcagtactttgctgaa
ggcgtctcgccgagccaagctcgcattcaagacgtcatcaaagaaggccaagagctcttg
gtgcaagtggaaaaagaagagcgtggcaacaaaggcgcggcgctcaccaccttcatcagc
ttggctggccgctatgtggtgctcatgcccaacaacccacgtggtggtggcgttagccgc
cgtatcgagggcgacgaccgcgctgaactcaaagaagcgatggaccaactggaatacccc
aagggcatgtccatcatcgcgcgcactgctggcattggccgcagcgcccctgagttgcaa
tgggacttgaactacttgctcaagctctggagcgccatcgacggcgccaagggtgccaaa
ggcgcattcttgatttaccaagaatccagcctcgtcattcgcgccatccgcgattacttc
aaccatgacatcggcgacatcttgatcgacaccgatgacatctatgagcaagcgcaccag
ttcatggcccacgtcatgcctgagcacgctgcccgtgtgaagcgctacagcgacgaaacc
ccgttgttcagccgcttccaaatcgaacaccaaatcgaatcggcctatgcccgcaccgtc
aacctgccctcgggcggcgcgattgtgattgaccacaccgaagccttggtgtcggtggac
gtcaactcggcccgtgccatcaaaggtggcgacatcgaagaaaccgccacccgcaccaac
ctcgaagccgccgacgaagtggcccgccaaatgcgcttgcgcgacttgggtggcctcatc
gtcatcgacttcattgacatggacgaaagcaagaaccgacgcgaagtggaaaaccgcttg
cgcgaagccttgcgccatgaccgtgcccgcgtgcagtttggcaccatcagcaaattcggc
ttgatggaaatgagccgccaacgcttacgcccagcgcttagcgaaggcgcgtccatcccc
tgcccacgctgcggtggctcaggccacgtgcgcgacaccgaaagctcggcactgcaaatc
ttgcgcatcatccaagaagaggccatgaaggacaacaccgccgccgtgcacgcccaagtg
ccggtggaagtggcctcgttcttgttgaacgaaaaacgtaccgaaattgcgaagatcgaa
attcaacaacgcttgaacgtcttgctcgtgccgaacaagacgctcgaaacccccaactac
aagttggagcgcttgaagcacgacgacccacgtttggacaagatcgaagccagctacaaa
atggccgaggagttcgaagatccaaccgccgtgacacgtcgctcgcaagagccaaccaac
aagcaaacgcccgtcatcaaaggcgtgttacccgatgcacccgcaccggcccacgaaccc
aagcccgcggcacctgccaaagcacacgccaaggccaagcatgcggacaagaaagaagcc
aaatctggcggcttgtggggctggttcacatcgctcttcagcagcgatgacgacaaaaaa
gccaaacccgtcgctggcgacaaaaagccaggcgaacgcggcgagcgccgtgatggccgc
aacgccaatggccgaggcggccgtggtggtcgcggtggccgtggtggtgaccgcgccgaa
cgcggtgagcgtcaagaaggccgcaacgaacgcaacgctgaaagcgtggaagcccgtggc
gaacgtcccgcacgcggtgaacgtgctgagcgtggtgaaggcactcgcaacgaaggtcgc
ggcccacgccaagaccgcaaccgcggtggtcgtggtgagccacgcaacaccgaaggccaa
gcagcgctcgacaacaacgcttctccagaagcccaagccgaagcacgtgccaaagcacgc
aacgagcgcatcgcccgcgaagaacgcagtgaaaacggcgaacaacgcagtgaaggtggc
caaggccgtcgtgaacgcagcccacgcggcgagcgcaacgacaaccgacgagaacgcgcc
cctcgcgctgacgagaacggcacacaagaagtcttgccactcgacaacgcagcagccgtg
gaaggccaagcaccgcaaaccgacgagaacggtggcgagcgtcgtgagcgccgctcacgc
gaccgctacggccgtgaccgccgcgagcgtggcgaccgcgcaccgcgtgaagaaggtgca
gcagaacacgccgatcaggcccatgctgctgagcacgaccacgcttcacaagagcaagcc
cctcaagaagcccgcgagccacgtgaaccacgtcaaccgcgtgagcctcgtggtgagcgt
caagatcgtaccccacgtcatacagcgcgcgacgaagcaccacaagctgaaccttcaacg
caagcccctgcacgcacgggcatgccacgcattcaagcgttcaccttgcccgtggccgac
atgcaagccgtggcccaaagcagtggcttagagtggatcaactccaaccctgagcgcatc
gctgctgtacaagccgccatcgccgccgaacccaaacctgtgcatgtgcctcgcgagcgc
aagcctttggtgatcgtggatgaaggccccttggtgttggttgagacccgcaaggatcta
taa
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