Limnobacter profundi: HKT17_02585
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Entry
HKT17_02585 CDS
T06583
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
limn
Limnobacter profundi
Pathway
limn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HKT17_02585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limn03019
]
HKT17_02585
Enzymes [BR:
limn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HKT17_02585
Messenger RNA biogenesis [BR:
limn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HKT17_02585
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QJR28672
UniProt:
A0ABX6N5M2
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All DBs
Position
546400..548019
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AA seq
539 aa
AA seq
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MTQTEPYTTNAAEEAALANVTFADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVLTGVDV
MGAAQTGTGKTAGFSLPILNRLMPLATENTSPARHPVRALILTPTRELADQVAANVHTYA
KFTPLRSTVVYGGVDINPQIQALRRGVELVIATPGRLLDHVQQKSINLGQVQVLVLDEAD
RMLDMGFLPDLQRIINLLPKTRQNLLFSATFSPEIQKLAKSFMASPTLIEVARRNATSEN
IKQVIFALDSEEDKRMAVCHLIQSKALSQVIVFSNTKLGTARLARHLEKEGVSSTAIHGD
KTQIERTKSLEAFKAGEVTVLVATDVAARGLDIADLPCVINYDLPTTPEDYVHRIGRTGR
AGAKGTAYSFVVKRDERALKDIEKLIGKAFVREELEGFVPGVRAPREERGGREGRSEGRG
EGRNEGRTYEGRSDRRPARSGDEAAPARERRPSRDMSYQGARFNDNAPIHRDAEYERLRA
KLAQTRVKDSLFNQPYQESKEDKAAGEAAASGQSSVGNNKPKNKNAAPVAFLLGGSPRN
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaactgaaccgtataccaccaacgcagctgaagaagctgcactcgcgaatgta
acctttgcagacttcgcgctgcaccccgacatccagaaagccattgatgcccaggggtac
acccaacccacacccattcaagccaaagccattccagtggtgctgactggcgtggacgtg
atgggcgcggcccagaccggtacgggcaaaaccgctggcttctcattgccgattttgaac
cgcttgatgccgctggccacggagaacacgtcgcctgcccgccacccggttcgtgcgctt
attttgacgcccactcgggagttggctgaccaggttgctgccaatgtgcacacctacgcc
aagttcactcctctgcgttccactgtggtgtacggcggtgttgacattaacccccagatt
caggcgttgcgccgtggggttgagttggtgattgccacgcctgggcgcttgctggatcac
gttcagcaaaaaagcattaacttgggccaagtgcaggtgctggtactggatgaagccgac
cgaatgctggatatgggctttttgcccgacctgcaacgaataatcaatttgttgcccaaa
acgcgccagaacctgttgttctccgctacgttctcgcctgaaattcagaagctggccaaa
agcttcatggcttcgcccacattgattgaagtggcgcgccgcaatgcaacttccgagaac
atcaaacaggttattttcgcgctcgacagcgaagaagataaacgcatggcggtttgccac
ctgattcaaagcaaagcgctaagccaggtcattgtgttttcaaacaccaagctgggcact
gcccgtttggcgcgtcaccttgaaaaagaaggtgtatcgagcacagccattcatggcgac
aaaacccagattgagcgaaccaagtcgcttgaagcgttcaaggctggtgaagtgacggtg
cttgtggccaccgatgtagccgcacgcggtttggacattgctgatttgccttgcgtgatc
aactacgacctgcccaccacgcctgaagattatgtgcaccgcattggccgcactggccgt
gctggcgccaagggcactgcgtattcgtttgtcgtaaaacgcgatgaacgtgccttgaaa
gacattgaaaagctgattggcaaagcctttgtgcgtgaagaacttgagggctttgtgcct
ggggtacgcgcgccaagggaagagcgaggcggtcgcgaaggtcgcagcgagggacgtggc
gaaggccgcaatgagggccgcacttacgagggtcgttccgaccgtcgcccggcacgaagt
ggtgatgaagctgcaccggcccgtgaacgccgcccttcacgtgatatgtcttatcagggg
gcccgtttcaacgacaatgcgccaattcatcgcgatgcggaatacgaacgcttgcgtgcc
aagctggcccaaacacgtgtgaaagactcgttgttcaatcagccttatcaagaatccaag
gaagacaaggccgctggtgaagctgctgcttcgggtcagtcttcggttggcaacaacaaa
ccaaaaaacaagaatgccgcgcctgtggcgtttttgttgggtggtagtccgagaaactaa
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