Limnobacter profundi: HKT17_05680
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Entry
HKT17_05680 CDS
T06583
Name
(GenBank) PAS domain S-box protein
Organism
limn
Limnobacter profundi
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c
PAS_3
Response_reg
HisKA
PAS_4
PAS
PAS_9
GAF
Hpt
PAS_8
PAS_11
Motif
Other DBs
NCBI-ProteinID:
QJR29234
LinkDB
All DBs
Position
complement(1219318..1222662)
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AA seq
1114 aa
AA seq
DB search
MMPAPTPLNEIARLKDLCSYKLLDSPAESEFDAIAELAAEICGTPTALISLIDEQRQWFK
STIGFDETETARDISFCGHAIAQTGLMEIQDTLQDERFRDNPLVSGAPHIRFYAGAPIVS
PRGYALGTLCVIDLKPGKLKDSQKKALLQLAKQVVSQMELKRTARLLKSENAFQQSILNS
TDAAVIATDPDGLITHFNKAAELMLECTAEQAINKLHSLDFHEPNEILIRKSQLLQESQK
TLVNDHYTLIGKARDGRVERRYWTLISRTGKHIDVELTVNPLHIEDGEFSGYLHIAQNLT
DIQRTQEELYLEKKRLHGVIEGTSAGTWEWNIPENKIIVNDRWAQIMGFTLEELQPLDLE
VWRSRVHPDDLLESERMLKQHFQGLIDVFEQPFRLKHKDGHWVWVQSHGRVVSRAKDGSP
LMMYGIHIDISEKKAAENALNNRKNELEKLVKKRTTDLAANMAFVNSMIESSPDCLKVLD
LDAKLLFMTARGCQIMEVDNFCDIEGADWLTFWNEKDQPKVQDALNCAKAGQLGRFQAMT
PTMKGTEKWWDVIISPIANNQGKPGRLLSVSRDITHQKKLEEKLRGWNADLEQRIATRTS
ELAQAREAAESANQAKTSFLANMSHEIRTPLNAIIGMSELLEQTGAAKERAHLLKLTRQS
AYSLLDIINDILDLSKIEAGQLEVNLEPMSLKSAFEFAADLFSQSAQAKGLYLHMKFDEN
IPHSMECDPLRLRQILFNLLSNAVKFTHKGGIEFNAEMKRDEQGSEQIVIEVIDTGIGIS
PEVQNQIFDPFVQAAHDTSKKFGGTGLGLSISQRLAKLLGGKLALHSVLNVGSCMTVTLP
LRRTEPDKLTQNESGRNSQEIIEVPQYVKNANILIADDNEINRALLKNQLGLIGCNVDVA
GDGLEALSKWIEKDYDLFICDCQMPKMSGFDVAQHIREITALRPDRRVQALIGYTADALS
ETRERCLAAGMDDVLVKPVRMETLKSVLIEWLEPGRKKLPVVTTMTSPIDWDALDEITGN
DRDFAKDLLLAFIADKGKQLEKLDNMIRNSDMQGVIRVTHKIKGTALGLCAKTLADTCGL
IETAAQETDDSIVQTGKELLEAEFEKIRDLLQNC
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgatgccagcacccacccccctgaatgaaatcgcccggcttaaggatttgtgcagctac
aagttactggactcccctgcagaaagcgaatttgacgccattgctgaattggcggctgaa
atttgtggcacgccaactgcgttgatctcattgattgacgagcaacgccagtggttcaaa
agcaccatcggattcgacgaaacagaaacagcccgggacatctccttttgtggtcacgca
attgcccaaacaggattgatggaaatccaggacactttgcaggacgaacgctttcgcgac
aaccccttggtgagcggcgcaccacacatccgtttctatgcgggcgcaccgattgtgtca
ccgcgcggttacgcgctgggcaccttgtgcgtcatcgacctgaaaccggggaagctgaaa
gattcgcaaaaaaaagccctgttgcaactggccaaacaagttgtttcgcaaatggagcta
aagcgaactgcaaggttattgaagtcggaaaatgcattccagcaatcgattttaaactca
acagatgctgcagttattgcgaccgatcccgacggcttgatcacgcatttcaacaaagca
gcggaactgatgctggaatgcacggccgagcaagccatcaacaagcttcattcacttgat
ttccatgaacccaacgaaatcctgattcgcaaaagccagcttcttcaggaatctcaaaaa
acccttgtcaatgaccattacaccctgatcggtaaagcacgcgatgggcgggtagaacgc
cgctattggacactgatctccagaacaggaaaacacatcgatgttgaattgacagtcaac
ccgctccatatcgaggacggagagttcagcggttacttgcacatcgcgcaaaacctgacc
gacatccagcgaacgcaagaagaactttatcttgagaaaaaaaggctgcatggcgttatt
gaaggcaccagcgccggaacctgggaatggaacattcccgaaaacaaaatcattgtgaat
gatcgatgggcacaaatcatgggcttcacgcttgaagagcttcaaccacttgatcttgag
gtgtggcgatcacgcgtacacccggatgacctgcttgaatcggaacgaatgttgaagcag
cattttcagggactcatcgatgtattcgaacaaccctttcgccttaaacacaaagatggg
cactgggtttgggttcaatcccatggccgcgtagtgagccgcgccaaggatggatcacca
ttgatgatgtatggcattcatattgatatttccgagaaaaaagcagccgaaaatgcactg
aacaaccgaaagaatgaactcgaaaaactggtcaagaaaaggaccaccgacctggctgca
aacatggctttcgtcaacagcatgattgagagcagccccgattgcctcaaagttctcgac
ctggacgccaagctacttttcatgacagcacgtggttgtcaaattatggaagtggacaac
ttctgcgacattgaaggcgctgactggctgacattctggaacgagaaagaccagcccaaa
gtacaggacgcactgaattgcgcaaaagctggccaactgggtcggtttcaagcaatgacc
cccaccatgaaaggcacggaaaaatggtgggatgtgattatcagtcccattgccaacaat
caggggaaaccgggcagattgttgtcagtgtctcgggacatcacccatcaaaaaaagctc
gaagaaaaactgcggggctggaatgccgaccttgaacagcgtatagcgacaagaacttct
gaattggctcaggcacgcgaagcagcagaatcagccaatcaggccaagaccagttttctt
gccaacatgtcgcatgaaattcgcacgccattaaatgccatcatcggcatgtcggagttg
ctggaacaaaccggtgcggcaaaggaacgcgcgcacttgctgaagttgacacggcagtcg
gcctattcattgctcgacatcatcaacgatattttggatctgtcaaaaattgaagcggga
caactggaggtgaatcttgaaccgatgtcactgaaaagtgcatttgaattcgcggcagat
ctgttctcgcaatctgcacaggccaagggtctgtatttgcacatgaagtttgatgaaaac
attccgcattccatggaatgcgatccattgcgtttgcgacaaattttgttcaacctgctg
agcaatgccgtgaaatttactcacaaaggtggaattgaattcaatgcagaaatgaagcgg
gacgaacaaggcagcgaacaaatcgtgattgaagtgattgacacggggattggcatcagt
cctgaagtccagaatcagatttttgatccgtttgttcaggcggcgcatgacaccagcaag
aaatttggtggcacaggtcttgggctttcgatatcccaacgactcgccaaacttctaggg
ggaaaacttgccttgcacagcgtgcttaacgtaggttcgtgcatgaccgttacgctgccc
ttaagaagaaccgaacccgacaaactcacgcaaaacgaaagcgggaggaattcacaggaa
ataattgaagtaccgcagtacgtcaaaaacgcaaatatcctgatcgcagacgacaatgaa
atcaaccgggcattgctcaagaaccagcttggcctgataggttgcaatgttgacgtggct
ggtgatggcctggaagctttgtcgaagtggatagagaaggattatgacctgttcatctgt
gattgccagatgcccaagatgagtggctttgacgtggctcaacacatccgggaaattaca
gcccttcgccctgatcgccgtgtacaagcacttattggctataccgccgatgccttaagt
gaaacacgtgaacgctgtttggccgcaggcatggacgatgtgttggtgaaacctgtgcgc
atggaaacccttaaatcagtattgattgaatggcttgaacccggccgaaaaaagttaccc
gtagtgaccaccatgacatcgcccatcgattgggacgcattggatgaaatcaccgggaac
gacagggattttgcaaaagacctgctgttggccttcatcgcagacaaaggcaaacaactt
gaaaagctggacaacatgatcaggaattcagacatgcaaggcgtgatcagggtgacccac
aaaatcaagggcacggcacttggactgtgtgcaaaaaccctggccgatacctgcggtttg
atagaaaccgcggcacaggaaactgacgacagcattgttcaaactggcaaagaactgctg
gaggccgaattcgagaaaattcgggatttgcttcaaaactgctga
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