Limnobacter profundi: HKT17_06815
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Entry
HKT17_06815 CDS
T06583
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
limn
Limnobacter profundi
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
limn03009
]
HKT17_06815 (rlmD)
Enzymes [BR:
limn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HKT17_06815 (rlmD)
Ribosome biogenesis [BR:
limn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HKT17_06815 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
RrnaAD
Methyltransf_15
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_23
Methyltransf_32
Methyltrans_SAM
Gp44_C
Motif
Other DBs
NCBI-ProteinID:
QJR29443
LinkDB
All DBs
Position
1469016..1470389
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AA seq
457 aa
AA seq
DB search
MGRKKKKDRTPVVFPRVQVAIESIDLDANGIGHVDGKVHFIDGAITGETVVAEITRVKPS
YSKGRTLQVLNTVSTRTTPKCPHYGVCGGCAMQHIEPNAQVAIKNRALEDLLQRIGRQTP
EQMMPPIYGSFWGYRHRARLSTRFVIKKERFFVGFHEKASSYVADMQECHVLPKHVSNMI
VPLGNMLVTLSIFMRIPQIELAVGDGVTAMVLRHLEPLSESDLDTIRSFGRKWGVDWWLQ
PGGPATAHRLEADKPVDLTYRIPSFGIRMRFRPTDFTQVNHMINDAMISRAVSLLDLKPE
DRVLDLFCGLGNFSLPLATKSSYVKGFEGSQDLVDRAGENAKFNGLADKTEFHVRNLFEV
ETPEWESWGQYDKVLVDPPRDGALEICKAIVGARAEFQPKRIVYVSCNPGTLARDTAVLC
NVGSYKLMKAGVVNMFPHTSHVESIAVFERVEYSDYS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcaaaaagaaaaaagatcgaacacccgtggtgtttccacgggtgcaagttgcc
attgaatcaatcgacctggatgccaatggcattggccatgtggatggcaaagtgcacttc
atcgatggtgcaatcaccggcgaaaccgttgttgccgaaattacgcgagtaaagccaagc
tattcaaaaggcagaacactgcaggtgctgaatacggtttccactcgcaccacgcccaag
tgcccgcattatggggtgtgtggcggatgcgccatgcagcacattgagcccaatgcccag
gtggccattaaaaaccgcgcgcttgaagacctgttgcagcgaattggtcgccaaactccc
gagcagatgatgccccccatttatggttcattttggggttatcgacaccgtgcgcgttta
agtacccgctttgtgatcaagaaagagcggttctttgtcgggtttcacgagaaagcatct
tcttacgtggcggacatgcaggaatgccatgtgttgcccaagcatgtgtccaacatgatt
gtgcccctgggcaatatgctggtcacgctgagcattttcatgcgtattccccaaattgaa
ctggccgtgggcgatggtgttaccgcaatggtgttacgccacctggaacccttgagtgag
tcagacctcgatacgattcgatcctttggccgaaagtggggtgttgactggtggctgcaa
ccaggtggcccagccactgcacatcgtcttgaagctgacaagccagtggacctcacttat
cgcattcccagttttggtattcgaatgcgattcaggccgactgatttcacgcaggtgaac
cacatgatcaacgacgccatgattagccgtgcggtgtcattgctcgatttaaagcccgaa
gaccgcgtgcttgatctgttctgcggcttgggtaatttctccttgcctttggccacgaaa
agcagttacgtgaagggttttgaaggttcgcaagacctggttgaccgagccggcgagaat
gctaaattcaacggcctggccgataaaaccgaatttcatgtgcgcaatctgttcgaagtg
gaaacacctgaatgggaaagttgggggcaatacgacaaagtcttggtcgatcctccgcgc
gacggggccttggaaatttgtaaggcaatcgtaggtgcgcgtgcagagtttcagcccaag
cgcattgtttatgtcagctgcaacccgggcaccttggctcgggatacggcggtactttgc
aatgtcggctcgtacaagttgatgaaagcaggggtggtgaacatgttcccccatacatcg
catgttgagtcgattgcagtgtttgagcgagtggagtacagcgactattcctga
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