Limnobacter profundi: HKT17_07235
Help
Entry
HKT17_07235 CDS
T06583
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
limn
Limnobacter profundi
Pathway
limn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HKT17_07235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limn03019
]
HKT17_07235
03009 Ribosome biogenesis [BR:
limn03009
]
HKT17_07235
Enzymes [BR:
limn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HKT17_07235
Messenger RNA biogenesis [BR:
limn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HKT17_07235
Ribosome biogenesis [BR:
limn03009
]
Prokaryotic type
rRNA processing factors
HKT17_07235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QJR29519
LinkDB
All DBs
Position
complement(1561191..1564169)
Genome browser
AA seq
992 aa
AA seq
DB search
MKRMLFNATHSEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRVEPSLEACFVNY
GEDRHGFLPFKEISRQYFKEGVEAGKARIQDVVKEGQELFVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEERQELREALDKLEYPKGMSIIARTAGIGRSVEELQ
WDLNYLLQLWTAIDGAGKSANGAFLIYQESSLVIRAIRDYFSPDIGEVLIDTDEIYDQAK
QFMQHVMPDMMNLVKRYRDDIPLFSRFQIEHQIETAYSRMVPLPSGGAIVIDHTEALVSI
DVNSARSTRGTDIEDTALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEKASNQKEVENR
VKDSLHFDRARVQMGKISRFGLMELSRQRIRPALNEGSHTTCPRCNGTGVIRDTESTALH
VLRILQEEAMKEGTASVHVQVPVDVATFLLNEKRSEIYKLEARLKVNVLLIPNKHLETPH
YEITRLRHDDERLEDPRQSFELATSKDEQSYYDKKTEGEAVKRQEAVIKGVIPTQPAPPH
QERKPKTELAVAAAAPAGPSLIQRIIGWFKRDTTAEAPAAVIEQKTNDRGGRGQNRSQGD
RNDQRNGRGGRNRRRGGRGREDEATSTSSGDEVKAADAQQTRSGQQNRGGRGKPRDERAA
GAEVLEVKPLAAVEAVAGDSAESSAEQSERTGGRRRRRRGRGGRGAGEGETGTAVDQAAM
QSEDAFQAADAAEDEELANKIAETMSYGSDEEAGGDEPRRRRRRRGRGGNRDGARENAGS
ELNASESSEETPEHTIAATGMNVSEMGLPAEPTQMGSTENNPDESNARAPEIQAVQSVIA
AVAQPKELELTQTETKVAHEATNEATSEPTTEQAAAAIAVDAFVDQTPADPTPFVPVAVE
TVVESKVQEAPVAATFATPVPKLNKEGLEQMLSSAGMLWVETDHEKWSVVQANLASTPKP
ARVPRARKPVVQIASENLVLVETKPEFRSGSN
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttatttaacgcaactcattcagaagagttgcgggtcgcaattgtcgac
ggccagaaacttatcgacattgacattgaaacagcgggccgtgaacaacggaaaagcaat
atttacaagggtgttattacccgcgtagaacccagtcttgaagcctgtttcgtcaactac
ggcgaagaccgacacggttttttgccgttcaaggaaatttcccgacaatatttcaaagaa
ggcgttgaagcgggtaaggcccgcattcaagacgtcgtcaaagagggccaagaactgttt
gttcaggtcgaaaaagaagaacgtggtaacaagggcgctgccctgaccaccttcatttcg
ctggctggccgttatttggtgctgatgcccaataacccgcgtggtggtggcgtttcacgc
cgcattgaaggcgaagaacgccaggaattgcgcgaagcactcgacaagcttgagtacccc
aagggaatgagcattattgcccgtacagcgggtattgggcgttcagttgaggaactgcaa
tgggacctgaactacctgttgcaactgtggactgcgatcgacggcgccggcaagtctgcc
aatggcgcattcctgatttaccaagaaagcagccttgttattcgcgccattcgcgattat
ttcagcccggatatcggtgaagtactcattgataccgatgaaatttacgaccaagccaag
caattcatgcagcatgtgatgcctgacatgatgaatttggtgaagcgctaccgcgatgac
attcccttgtttagtcgcttccagattgaacatcaaattgaaaccgcctacagccgcatg
gttccactgccctcgggcggcgcgattgtaatcgaccacactgaagccttggtgtcgatc
gacgtaaactcggcccgctctacacgcggcaccgacattgaagacaccgccttgcgcact
aacctggaagccgctgaagaagtggcccgtcagttacgcttgcgcgacctgggtggcctg
atcgtgatcgattttatcgacatggaaaaagccagcaaccagaaggaagtggaaaaccgg
gttaaagacagtctgcattttgaccgtgcgcgcgtacaaatgggcaaaatcagccgtttt
ggcctgatggaactaagccgtcaacgcatccgccctgccctgaatgaaggctcgcacacc
acttgccctcgctgcaatggcaccggcgtaattcgcgacaccgaaagcaccgccttgcat
gtgcttcgtattctgcaagaagaagccatgaaagaaggcacagccagcgttcatgtgcag
gttccggtcgatgtggctacatttctgctgaacgaaaaacgctcagaaatttacaaactg
gaagcgcgcttgaaggtgaatgtgctgctgattccaaacaaacatttggaaacaccccac
tatgaaattactcgcctgcgccatgacgatgaacgtctggaagacccgcgccaaagtttt
gagttggccacgtccaaagatgagcaaagctactacgacaagaaaaccgaaggcgaagct
gtaaaacgtcaggaagcggtgatcaagggtgtaattccaacccagcccgcaccgccccac
caggaacgcaagcccaaaactgaattggcagttgcggctgctgcaccggcaggcccttcg
ttgattcagcgaattattggctggttcaaacgagataccacggcggaagcgccagcggcg
gtgatcgagcagaaaaccaacgaccgtggaggccgcgggcaaaaccgctcacaaggtgac
cgcaatgaccaacgcaatggtcgtggtggaagaaatcgccgacgcggcggccgtggtcgt
gaagatgaggcaacaagcacatcaagcggcgacgaggtgaaggccgctgatgcccagcaa
acacgttctggtcaacagaatcgtggtggccgaggcaaaccacgcgatgaacgcgcagca
ggcgccgaggtcttggaagtgaaacctttggcagccgtagaggctgtagctggggattcg
gctgagtcctctgccgaacaaagcgagcgcactggtggtcgccgccgccgtcgtcgtggt
cgcggaggccgcggtgcaggtgaaggtgaaaccggcacagccgtggatcaggctgcgatg
caatcggaagacgcattccaggctgcagacgcagcagaagacgaagaactggccaacaag
attgctgaaaccatgtcgtacggaagcgatgaagaggcaggtggcgatgagccacgtcgc
cgtcgtcgtcgccgtggtcgtggtggcaatcgtgatggtgcgcgtgaaaacgcaggatcg
gaattgaacgcttcagagtcttcagaggaaaccccggagcacaccattgcagcaacaggt
atgaatgtttctgagatgggactgccagccgagccaacacaaatgggctcgactgaaaac
aacccggatgaatccaatgcgcgcgcgcctgaaattcaggctgtgcaatcggtgattgca
gcggtggctcaacccaaagagctcgaacttacacaaactgaaaccaaagtcgcccatgaa
gctaccaatgaagcgacaagtgagccgacaaccgagcaggccgcggctgcgatcgcagtt
gatgcgtttgtagaccaaactcctgcagatccaacaccgtttgtgccggtagcggttgaa
acagttgttgaatccaaggttcaggaagcgccggttgccgcgactttcgcaactccggta
cccaagctgaacaaggaaggccttgagcaaatgctgagcagtgctggcatgctgtgggtt
gaaactgaccatgaaaaatggtctgtggttcaagccaacctggcgtccacaccaaaaccc
gcacgtgttccgcgcgcgcgcaagccggttgttcaaattgcaagcgagaacctggtactg
gttgaaaccaagccagaattcaggtcaggttcgaactaa
DBGET
integrated database retrieval system
