Limnobacter profundi: HKT17_08195
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Entry
HKT17_08195 CDS
T06583
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
limn
Limnobacter profundi
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limn03019
]
HKT17_08195 (hrpA)
Enzymes [BR:
limn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HKT17_08195 (hrpA)
Messenger RNA biogenesis [BR:
limn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HKT17_08195 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
WHD_HA2
AAA_19
AAA_22
SRP54
ResIII
AAA_25
AAA_30
nSTAND_NTPase5
nSTAND3
DUF3336
T2SSE
NACHT
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QJR29693
UniProt:
A0ABX6N6L1
LinkDB
All DBs
Position
complement(1751874..1755764)
Genome browser
AA seq
1296 aa
AA seq
DB search
MLSKEQTLQPPPEIRYPEELPVSQRRAEIKHLIAANQVVIVCGETGSGKTTQLPKMCLEL
GRGLNGQSIVHTQPRRLAATATAKRIAQELNSEIGQWVGFKIRFQDQSNASTAVKLVTDG
ILLAESQTDPLFKKYDTIIIDEAHERSLNIDFLLGYLKDVLTKRPDLKLIVTSATIDAER
FSKHFENAQGKPAPVIEVSGRLYPVEVRYKDPNDFDTSRRKNAPVNLADEVDEDAFQAAT
LDAVEELCREGQGDILMFLPGEREIRDMANFLSKNLRQSLEILPLFARLTAQEQERIFKP
SGRRRIVLSTNVAETSLTVPGIRYVIDSGVARVKRYSYRNKVEMLQVERISKASANQRAG
RCGRVANGVCIRLYAEADFAGRTDYTDPEILRSSLASVILRMKSLHLTEVEDFPFLQRPM
GRAIADGYQLLSELNALDDAGHLTKTGRALAKLPLDPRIARMLFEASQRGCLNELLVLAA
ALSIQDPRDRPIDAQEAADNAQQQFDDAESDFMSFLKLWNYFIDLKQQNLTNRDMKNALQ
RKFLSANRLREWSEVHQQLTAMVKDQKWTLNATPATYDQIHLALMAGLLGNIGLKHETDP
VYLGARSIKFSVHPGSNLFKKGGKWIMAAELVETTRLYARSVAKIQPEWIEKVGAHLVKR
NHNNPHWEKGSGQAVALETGTIYGLPIYSQRRVSLARFNQADARRLMIHEGLVPGQVKTT
VPFYVHNRKLVEDLEKLEHKARRQDILVDEALIAQFYDDKLPAGVYNQQTLENWAKQASK
EDLAALYLNKEDLLSKKAGDITTEFYPKKLEMGGLAFDLTYHFEPGSPRDGVTLTIPLML
LNQVNPGRTEWLVPGMLKEKALLLLKSLPQKLRRHCVPVPQFAEKFAQAHFDSNLYEKPL
LERLRDFVASETPARPLLSDFRIETLPPHHFMNFKLIDEHGRQLDMQRSLSALKAEWGRK
AQESFKSSDVVEQVRAQVGGQAGIASPASETRKLSPNPAKSSSGSNSAFSDQPITDWSFG
SLPDMLEIKRAGQTFFGYPALKDMGEHCIIEVFDEEEIARKVHLDGVLRLFNIALKEPLK
YLTKNLIDFQKVAMLYMPLGSSEELQQQWIKLTLMRSALAAGLPTTQDEFNTKAQEARSR
MNLIAQEIGKVLLIILNEYSALNKKLQALSKSFPECVADIQNQLNWLLPKGFLLKKPWEQ
LAHYPRYLKAAQIRLERVRNAVDRDKQLMKDVMDLQLHWVRASSQLKGQEDESLSQFAWQ
LQELRVSLFAQELRTPMPVSVKRLQKAWETMARRQQ
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgttgtcaaaagaacaaacccttcagcccccacccgaaattcgataccccgaagagctg
ccggtttcacaaaggcgagccgaaatcaagcatttgattgcagcgaaccaggttgtaatc
gtgtgcggtgaaacaggttcgggtaaaaccacgcagttgccaaaaatgtgtctggaactt
gggcggggcttgaacgggcaaagtattgtgcacacgcagcctcgtcgattggcggccacc
gccactgccaagcggatcgcgcaagagttgaattccgagattggccaatgggtgggtttc
aaaattcggtttcaagaccaatccaatgccagcaccgcggtgaagttggtaaccgacggc
attttactggctgaaagccaaaccgacccgctgttcaagaaatacgacaccatcattatt
gacgaagcgcacgagcgcagcttgaacatcgacttcttgctgggttatttgaaagatgtg
ctcaccaagcggcctgatttgaaattgattgtgacctcagccaccatcgatgcagagcgg
ttctccaagcattttgaaaatgcccaaggcaagcccgctccggtgatcgaagtgtctggt
cgtttgtacccggtggaagtgcgctacaaagaccccaatgattttgacaccagcaggcgc
aagaatgcacctgtgaacctggctgatgaggtggatgaagatgcctttcaggcagccaca
ctcgatgcggtagaagaactttgccgcgaagggcagggcgacattttgatgttcttgcca
ggagagcgggaaattcgcgacatggcaaattttctcagcaaaaacctgaggcaatcgctg
gagatcttgcctctgtttgccaggttgacagcacaggaacaggagcgcattttcaaaccc
agcgggcgcaggcgcattgtgttgtccaccaacgtggctgaaacgtcgctgacagtacct
ggtattcgttatgtgatcgattcaggcgtggcccgcgtgaagcgctacagctaccgcaac
aaggttgaaatgttgcaggtagaacgaatttccaaggcatcggccaaccagcgggcaggg
cgttgcggccgggttgccaatggggtctgtattcgcttgtacgccgaggccgacttcgca
ggccgtaccgattacacagacccggaaattcttcgatcctcgctggcgtccgttattttg
cgcatgaaaagcctgcacctgaccgaggtggaagactttccctttctgcaacgccccatg
gggcgcgcgattgcggacggttatcaattgctcagtgaactgaatgcactggacgatgct
gggcacttgaccaaaacaggccgggcactggccaaactgccgcttgacccccgaattgcc
agaatgctgtttgaagccagtcagcgcggatgcctaaacgagttgctggtgttggccgct
gccttgtcgattcaagatccacgcgaccgcccgattgacgctcaagaggctgcagacaat
gcccagcagcaattcgacgatgcagaatctgatttcatgtcttttctgaagctatggaat
tattttattgatttaaaacaacaaaatctgacaaatcgtgacatgaaaaatgcgctccag
cgcaagtttctgtccgcgaaccgcctgcgtgagtggagtgaagttcatcaacagcttacc
gccatggtgaaagaccaaaagtggactttgaacgccacacccgctacctacgatcaaatt
catcttgcactgatggcgggtttgctgggcaacatcggtttgaagcacgagacagatccg
gtttatctcggcgcgcgcagcatcaagttttcagttcatccaggttcaaacctgttcaaa
aaaggtggcaaatggatcatggctgccgaactggttgaaaccacccgcctgtatgcccgc
agtgtggccaaaattcaacccgaatggattgagaaggtgggcgcgcatttggtgaagcgt
aaccacaacaatccgcattgggagaagggctctggtcaggccgtagccctggaaacaggc
actatttatggcttacccatttactcccagcgccgtgttagcctggcaaggtttaatcaa
gccgatgcgcgcaggttgatgattcacgaaggcctggtgcccggacaggtaaaaaccacc
gtgcccttttatgtacacaaccgcaagctggttgaagacctggaaaagctggagcacaaa
gcccgccgccaggatattttggtggatgaggcgctgattgcgcagttttatgacgacaaa
cttccggccggtgtgtacaaccagcaaaccctggaaaattgggcgaaacaagccagcaag
gaagaccttgcagcgctgtacctgaacaaggaagacctgctgagcaagaaagcgggcgac
attaccaccgagttttatccgaaaaagctggaaatgggcggcttggcgtttgacctgact
tatcactttgagcccggaagcccccgcgatggtgtcacactgaccattcccctgatgctg
ttgaatcaggtaaacccgggccgtactgaatggttggtacccggcatgttgaaagaaaag
gccttgctgctgttgaaaagtttgccgcagaagcttcgccgtcactgtgtacccgtgccg
caatttgccgaaaagtttgctcaagcgcatttcgattcaaacttgtatgaaaagccgctt
ctggaacgccttcgcgatttcgtggccagtgaaacacccgcacggccattgctcagcgat
ttccggattgaaaccctgccgccgcaccacttcatgaatttcaagttgatcgacgaacac
gggcgtcaactggacatgcagcgcagtttgtcagccctgaaggcggaatggggccgcaag
gcgcaggaaagtttcaaaagctccgatgtagtggagcaggtgcgtgctcaggtaggaggg
caggcgggcattgcttcaccggcctctgaaacacgcaaactttcgcccaatccagcaaag
tcttcctccggcagcaacagtgcgttcagcgatcagccaatcaccgactggagctttggc
agcttgcccgacatgctggagatcaagcgtgcaggtcaaaccttctttggttatcctgct
ttaaaagacatgggtgagcattgcattattgaggtattcgatgaagaggagattgcccgc
aaagtacatctggatggcgtgcttcgcctgttcaatattgccctgaaggagcctttgaag
tacctgaccaaaaacctgattgattttcagaaggtagccatgctgtacatgccgctgggc
tcatccgaagaactgcagcagcagtggatcaagctgactttgatgcgaagcgcgcttgca
gcaggattgcccaccacgcaagacgagttcaacaccaaagcgcaggaggcacgcagccga
atgaatctgatcgcccaggaaatcgggaaagttcttttgattattctgaatgaatacagt
gcacttaacaaaaaactccaggcattgtcgaaatcattccctgaatgcgttgctgacatt
caaaaccagttgaactggttgctgcccaagggttttttgctgaaaaagccgtgggagcaa
ttggcccattacccgcgttatttgaaagcggcgcaaatacgccttgagcgagtgcgcaat
gcggttgatcgagacaaacagttgatgaaagatgtcatggatcttcaattacactgggtc
cgtgcgagttcacaattgaaaggtcaggaagatgaaagcctgagccagtttgcctggcaa
ctccaggagctgcgagtttcgctgtttgcccaggaacttcgtacgccaatgccagtttcc
gtcaagcgtttgcaaaaggcatgggaaaccatggcaaggcgacaacaataa
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