Limnobacter profundi: HKT17_10955
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Entry
HKT17_10955 CDS
T06583
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
limn
Limnobacter profundi
Pathway
limn03030
DNA replication
limn03410
Base excision repair
limn03420
Nucleotide excision repair
limn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HKT17_10955 (polA)
03410 Base excision repair
HKT17_10955 (polA)
03420 Nucleotide excision repair
HKT17_10955 (polA)
03440 Homologous recombination
HKT17_10955 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limn03032
]
HKT17_10955 (polA)
03400 DNA repair and recombination proteins [BR:
limn03400
]
HKT17_10955 (polA)
Enzymes [BR:
limn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HKT17_10955 (polA)
DNA replication proteins [BR:
limn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HKT17_10955 (polA)
DNA repair and recombination proteins [BR:
limn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HKT17_10955 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HKT17_10955 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
QJR30188
LinkDB
All DBs
Position
complement(2333841..2336624)
Genome browser
AA seq
927 aa
AA seq
DB search
MKRLLLVDGSSYLYRAFHAMPDLRNRAGEPTGAIYGMVNMLRRLRADYNTDDITSNCIAC
VFDAPGKTFRDDIYPEYKANRASMPEDLAAQIPHIHEVTRAMGWPIVMEPGIEADDVIGT
LAQVALEQGFDEVIVSTGDKDMAQLVNDKVRLVDTMKNAVMTRDAVFEKFGVYPEQIVDY
LTLVGDTVDNVPGVEKVGPKTAAKWLAEYKTLDGVVANADKIGGKVGENLQKALDWLPTG
KTLVTIKTDCEFELRRHIEEQLKANAENKEALKQLFQRFEFKTWFRALGGVAEDEVTTKP
KADGPPDGSSMSLFDAPTQAVDSIETICVQTQVQLDALLVELKAASASKTPVAFDTETDS
LEPMNARIVGLSFSVKPGVGYYIPLTHQDLTAEPQLPLAEVLAFLKPWFEDSDSPKIAQN
AKYDLHVMANHDVWVKGLFEDTMLASYILEAHKPHGMDALALRWLNYNTIKYEEVAGKGA
SQITFDQVPIDTATKYAAEDAEVTLRLAHTLKAELDKVPELAKLYRDVELPFGQVLFEVE
RNGVLIDSDKLEAQSAEIADKLKLIEEQAFELAGGSFNLNSPKQIGELLFDKLGLPVVKK
TASGAPSTDEEVLSKLAEDYPLPAKLLEHRSLAKLKSTYTDKLPRMVNARTGRVHTNYAQ
AVAVTGRLASNDPNLQNIPVRTAEGRRVREAFIAAPDCVLVSADYSQIELRIMAHISGDE
ALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGLIYGMSAFGLAGNLGITR
EAAKLYIDRYFARYPGVAKFMDNVRAQAKEDGFVQTVFGRRLWLPEIKSPNGPRRAGAER
AAINAPMQGTSADLIKMAMVELSAWLKAEQLNTKMIMQVHDEVIFEVPKGELELIQKRVP
EIMTQVAKLRVPLEVGCGVGNNWEEAH
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgattactcctggttgatgggtcgagctacctgtaccgtgcctttcatgccatg
cccgatttgcgaaaccgcgcaggcgagcccactggtgccatttatggcatggttaacatg
cttcgacgcctgcgtgcagattacaacactgacgatatcacctccaattgtatcgcctgt
gtgttcgatgcgccgggtaaaacctttcgtgacgacatttaccccgaatacaaggcgaac
agggccagcatgcccgaagaccttgccgctcagatccctcacattcatgaagtgacccgc
gccatgggttggcccatcgtgatggagcccggtattgaagcggacgatgtgattggtacc
ttggctcaagtggcgcttgagcagggctttgatgaggtgattgtgtccacgggcgacaaa
gacatggcccaactggtgaatgacaaggttcgcttggtggacaccatgaaaaatgcggtc
atgactcgggacgccgtgtttgaaaagttcggtgtgtacccggaacaaattgttgattac
ctgacgctggtgggcgacaccgtagacaacgtgcctggtgtggaaaaggtggggccgaaa
accgctgcgaagtggctggcggagtacaagaccctggatggcgtggtggccaatgccgac
aaaattggcggcaaagtgggcgagaaccttcaaaaagcgctggactggttgcccacaggc
aaaaccctggtcaccatcaaaacagattgcgagtttgagttgcgccgccacattgaagag
caactgaaagcaaatgctgaaaacaaagaagcgttgaagcaactgtttcagcgtttcgaa
ttcaagacatggttccgcgctctgggcggcgtggctgaggacgaggttacgaccaaaccc
aaagcagatggtccgcccgatggcagttcaatgagcctgtttgatgcgcctacacaggct
gtggattcgattgaaaccatttgcgttcaaacccaagtgcagcttgacgctttgttggtg
gaattgaaagccgcttcggccagcaaaacgccggtggcctttgacactgaaaccgattcg
ctggaacccatgaatgcgcgcattgtgggcctttcattttcagtgaaaccaggtgtgggc
tattacattccactgacgcaccaagatttgaccgccgagccacaattgccattggccgag
gtgctggcattcctgaagccttggtttgaggattccgattcgcccaaaattgcccagaac
gccaaatacgacttgcatgtgatggccaatcacgacgtgtgggtgaagggcctttttgaa
gacaccatgctggccagctacattctagaggcccacaagccccacggcatggatgctttg
gccctgcgctggttgaactacaacaccatcaagtatgaagaagtggcaggcaagggtgcc
agtcaaattacctttgaccaggtgcctatcgacacagccaccaagtacgctgccgaagat
gctgaagtcaccttgcgtctggcccacaccttgaaagccgagctcgacaaggtgccagaa
cttgccaagctgtaccgcgatgtggagttgcctttcgggcaggtgctgttcgaagtggag
cgcaatggtgtattaatcgattccgacaagcttgaagcccaaagcgctgaaattgctgac
aagctaaagttgattgaagagcaagcctttgaattggctggtggtagttttaacctgaac
tcgcccaagcaaatcggcgagctgttgttcgacaagctgggtttgcccgtggtgaaaaaa
accgccagtggcgcaccctccaccgatgaagaagtgctcagcaaattggctgaagattac
cccctgcccgcgaagttgctcgaacaccggtcactggccaaactgaaaagcacttacacc
gacaaattgccccgcatggtcaatgcgcgtacagggcgtgtgcacaccaactatgcgcaa
gccgtggcagttactggccgcctggccagcaatgatcccaacttgcaaaacattcctgta
cgtactgcagagggtcgccgggtgcgagaggcctttattgcagcaccggactgtgtcttg
gtttccgctgattattcacaaattgagttgcgcatcatggcgcatatttcaggcgatgag
gccctgattcacgctttcaatgagggcttggatattcacagtgccacagcgtcagaaatt
ttcggagtgggtttgaacgaggtcacatccgaccatcgccgtactgcgaaggtgattaac
ttcggtcttatctatggcatgagtgcctttggcttggctggcaatctgggtattacccga
gaagctgcaaaactttatattgaccgttactttgcccgctatcccggtgtggcgaaattt
atggacaatgtacgcgcacaagccaaagaagacggctttgtacaaacggtgttcgggcgc
cggttgtggctgcctgaaattaaaagcccgaatggcccgcgcagggccggtgccgaacgg
gctgcgatcaatgcgcccatgcagggcacatcagcagacctgatcaaaatggccatggtt
gaattgtcggcttggttgaaggcagaacaactcaacacaaagatgatcatgcaggttcac
gacgaagttattttcgaagtacccaagggtgaactcgaattgattcagaaacgtgtacct
gaaatcatgacgcaggtggccaagcttcgagttccactggaggtgggttgcggcgttggc
aacaattgggaagaggcacattaa
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