Limnobacter profundi: HKT17_10975
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Entry
HKT17_10975 CDS
T06583
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
limn
Limnobacter profundi
Pathway
limn03420
Nucleotide excision repair
limn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HKT17_10975
03430 Mismatch repair
HKT17_10975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limn03400
]
HKT17_10975
Enzymes [BR:
limn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HKT17_10975
DNA repair and recombination proteins [BR:
limn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HKT17_10975
MMR (mismatch excision repair)
Other MMR factors
HKT17_10975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QJR30192
LinkDB
All DBs
Position
complement(2339719..2341950)
Genome browser
AA seq
743 aa
AA seq
DB search
MSLLDSLNPEQLAAVTLPRESALILAGAGSGKTKVLTARIAWLIQTGQVGPNGVLAVTFT
NKAAKEMLHRISSMLPINTRSMWVGTFHGLCNRMLRAHWKEARLPQAFQILDMQDQLSAI
KRMYKVLGIDAEKFPPKQLSYFIGSAKDQGLRPKDVEAHDEYHRMMVRLYEAYEAQCQRE
GVVDFAELLLRSFELLGANPALREHYQARFKYILVDEFQDTNSLQYNWLKRLAGSQGCIF
AVGDDDQSIYAFRGARVANMVQFENDFNVQNRIKLEQNYRSVGNVLKAANVLIAHNKARL
GKELWTEAGEGEAIRVYEATSDQDEAAFIIDRIKKLVLEEGYGRSDIAILYRSNAQSRVV
EQALFNAGMPYRVYGGLRFFERAEIKHALAYLRLMDNADDDNSFSRVVNFPARGIGARSV
EQLQDISTAQGTSLYRAIHRMEGRAQAGLKKFADLIERMRFETRGLSLADLVDKVINESG
LVAHFQADKDGEDRVENLKELVNAAASFAIAEGYYQDAAATMVDEEKLITPLADFLSHAS
LEAGDNAAAAGQEAIQLMTAHSAKGLEFKCVFVTGLEEGLFPHENSIGNSVEGGDGTSVE
AVEEERRLMYVAITRAREQLFLSHAQQRMLHGQIRYHLRSRFLDELPEEVLKWLTPKRAH
IASQGWDALDSKVWGQNKTLNVGYSNKAAKRPYDIGTGVNHAKFGSGVVVAYEGEGDDQR
IQINFGRQGMKWLMLSLAKLERG
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttactcgatagtctgaaccctgaacaactggcagccgtcaccttgccccgtgaa
tcggcactgattctggcgggggcaggcagcggcaaaaccaaggtgctgacagcgcgcatt
gcctggttgattcaaaccgggcaggtgggccccaatggggtattggcggttaccttcacc
aacaaggcggccaaggaaatgcttcaccgcatttcaagcatgctgcccattaacacccgc
agcatgtgggtgggtacttttcacggcttgtgcaaccgcatgttgcgcgcgcactggaag
gaagctaggttacctcaggcttttcaaattctggacatgcaagaccaattgtcggcaatc
aagcgcatgtacaaagtgctgggcatagatgctgaaaaatttccgccgaagcagttgagc
tatttcattggttcagccaaagaccaaggcctgcggcccaaagacgtagaggcgcacgac
gaataccaccgcatgatggttcgcttgtacgaagcctatgaagcccagtgccagcgcgag
ggtgtggttgattttgctgagctgctgttgcgttccttcgaattgttgggcgccaaccct
gcgctgcgggaacactaccaggctcgatttaaatacattttggtggacgagtttcaagac
accaacagcctgcaatacaactggttgaaacgcttggctggatcgcaaggttgcatcttc
gcagtgggggacgatgaccagtccatttacgcttttcgcggtgcgcgcgtggccaatatg
gtgcagtttgaaaatgatttcaatgtacaaaatcgcatcaaactggagcaaaactaccgt
tcggtgggcaatgtgctgaaagccgccaacgtgctgattgcgcacaacaaggctcgcttg
ggcaaagagttgtggaccgaagctggcgaaggtgaggcgattcgggtgtatgaggccacc
agcgaccaggatgaggcagctttcatcattgaccgaattaaaaagctggtgcttgaagaa
ggctacggtcggtcggacattgcaattctgtaccgctccaatgcgcaatcccgggttgtt
gaacaagccttgttcaatgcgggcatgccttatcgggtgtatggtggtttgcggtttttt
gaacgtgcagaaatcaagcatgcgctggcgtatttgcgtttgatggacaacgccgacgac
gacaattccttctcacgtgtggtgaactttcctgcacggggaattggtgcgcgcagcgta
gagcaacttcaggacatttctacagcacagggtacttcgctgtaccgcgccattcatcgc
atggaaggcagggcgcaagccggtttgaaaaaatttgcagatttgatcgaacgcatgcgg
ttcgagacccgaggtttgagccttgctgacttggtcgacaaggtgatcaatgaatcgggt
ttggtggctcattttcaagcggacaaagatggtgaagaccgcgtagaaaacttgaaagaa
ttggtgaacgccgctgcctcgtttgcgattgctgaagggtattaccaagatgccgcagcc
accatggtggatgaggaaaagttgattacgccgctggctgattttctttcccatgcttcg
ctcgaggccggtgacaatgctgcggcagcgggtcaagaggccattcaattgatgacagcg
cattcggccaaagggcttgaattcaagtgcgtcttcgtcaccgggcttgaagaagggcta
ttcccgcacgaaaacagtatcggcaattccgtggagggtggcgatggcaccagcgtagag
gctgtggaagaggaacgacgcttgatgtatgtggccattacccgcgcacgagaacagctg
tttttaagccacgcgcagcagcgcatgttgcacgggcaaattcgatatcacctgcgctct
cgttttctggacgaattgccagaggaggtgttgaaatggttaacgccgaaacgcgcacac
attgccagccaaggctgggatgcactcgattccaaagtgtgggggcaaaataaaacgctc
aacgtgggttatagcaacaaagccgccaagcgaccctacgacatcggcacgggtgtgaat
catgccaagtttggtagcggtgtagtggtggcttatgagggcgagggtgacgaccaaaga
attcaaatcaacttcggccgccaaggcatgaagtggctgatgctgagtttggcgaagctt
gagcggggctga
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