Limnobacter sp. SAORIC-580: HKT17_11600
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Entry
HKT17_11600 CDS
T06583
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
limn
Limnobacter sp. SAORIC-580
Pathway
limn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HKT17_11600 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limn03019
]
HKT17_11600 (pcnB)
Enzymes [BR:
limn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HKT17_11600 (pcnB)
Messenger RNA biogenesis [BR:
limn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HKT17_11600 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF2204
Motif
Other DBs
NCBI-ProteinID:
QJR30300
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All DBs
Position
2470391..2471848
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AA seq
485 aa
AA seq
DB search
MIKKLFKRMFSKPATLGRETPGPAAHLNLGTPKKVKASYGVHKPKVWGVAEHKIDRRLVS
HNAIRVCETLQSKGYKAFVVGGAVRDLLLGMRPKDFDVATDASPEQTQRLFRRARVIGRR
FQIVHVMFGPETIETSTFRALASASNEKDEHGRVLRDNEFGRQDEDASRRDFTVNAMYYD
PSTETVWDYHHGMEDLRARVLRMIGEPSLRYREDPVRMLRVVRFAAKLNFEIEPATYAPI
AELSDLLRNVPASRLFDEMLKLLMSGSAMACLKGLREAGLHHGVFPLLDAILEHQRGEPF
LTEALARTDKRVKEGKPLSPGFLFACLLWHLVLENWEKKLEQGELKFPALFAAMDDVLAE
QAERTAIPRRLTGDMREIWAFQPRFEKRAGKAPFRMLEQQKFRASLDFYELRAMVGDIDA
DVELAEWWREFSDGDVNNRQNMLDALRGTPAGTDGAAKKKRRRRKPKSGTSAQGASPAGQ
EQQGE
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaactgtttaaacggatgttttccaagccggccacgctggggcgtgaaacc
ccggggccagctgcgcacttgaacctggggacacccaagaaagtgaaagcaagctacggc
gtgcacaaacccaaggtgtggggtgtggccgagcacaaaattgatcgccgcctggttagc
cacaatgcgatccgcgtgtgcgaaaccttgcaaagcaagggttacaaagcatttgttgtg
ggcggtgccgtgcgcgatttgctcttgggcatgcgtcccaaagacttcgacgtggccact
gacgcaagccctgaacaaacccaaagactgtttcgccgcgcacgggtcattggcaggcgc
tttcaaattgtgcacgtgatgtttggccctgaaaccattgaaacatcaaccttcagagcc
ctggccagtgcaagcaacgagaaagatgagcatggcagggtgctgcgcgacaatgaattc
gggcggcaagacgaagacgcctcaaggcgcgacttcaccgtgaacgccatgtactacgac
cccagcacggaaaccgtgtgggactaccaccatggcatggaagacctgcgcgcgcgcgtg
ctacgcatgattggagagccaagcctgcgctaccgcgaagacccggttcgaatgctgcgt
gtggtgcgttttgcagccaaactgaatttcgagattgaaccagccacctacgcgcccatc
gccgagttgtctgacttgctgcgcaatgtgcctgcctcgcggctgtttgatgaaatgctg
aagctgctgatgagcggctcggccatggcctgcttgaaaggtttgcgggaagctggatta
catcatggtgtatttcccttgctcgatgcaattctggagcaccaacgcggtgaacccttt
ttgacggaggctttggcccgcaccgacaaacgtgtcaaagaaggcaagccactcagcccc
ggctttctgtttgcctgcctgttgtggcatttggtgctggaaaactgggagaaaaaactt
gaacagggggaactgaaattcccggcccttttcgctgcaatggacgatgtgctggccgaa
caggccgagcgtacagctattccccgtcgcctgactggtgacatgcgtgaaatttgggca
tttcaaccgcgtttcgaaaaacgcgcaggcaaagcaccgtttcgcatgctagagcagcaa
aaatttcgggcgtcactggacttctatgaattgcgtgcaatggtgggcgacatagacgcc
gatgttgaattggctgaatggtggcgggagttcagcgatggcgatgtgaataaccgccag
aatatgctggacgcgctgcgtggaacacccgcgggtactgatggagcagccaagaaaaaa
cgacgtcgcagaaaacccaaatcaggcacaagtgcacaaggtgcaagccctgcgggacag
gagcaacaaggcgagtga
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