Limnobacter sp. SAORIC-580: HKT17_12400
Help
Entry
HKT17_12400 CDS
T06583
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
limn
Limnobacter sp. SAORIC-580
Pathway
limn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HKT17_12400 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
limn03021
]
HKT17_12400 (rpoD)
Transcription machinery [BR:
limn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HKT17_12400 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QJR30438
LinkDB
All DBs
Position
complement(2641423..2643879)
Genome browser
AA seq
818 aa
AA seq
DB search
MAGKKVSPQKATVKEAKVNTVVKKTESKKTAPVAEKPVSKKAAAPAPAPVVADETPKRGR
KPKVVEAAAEPVAKAAKPVAKAAAKPAKVAEPVAVEEVQPKKRGRKPKVVEQAAPAQTAE
APKGRGRPPKAGKPKAEEEDDEDIDSGADASIDSDDVPEDDDSDAKKADLVIMPKRGRGS
KAKDKALINSAYLSSANATVEELELRRNQLKTLIKMGKERGYLTFAEINDHLPDDVTDGE
VIEAMVSTFHDMGITVYEQAPDAEALLMNDNAPVGTSAEDAEEEAEAALSNVDSEFGRTT
DPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVQAISACPAIVEDVVGLGQRIAEGL
STVDEVVDGIVDDSITDDMVEAAAPEEVSDDEDSDDEEEGNDGGTTSGMSARQLEELKKN
SLVVFAEIEKQFAKLKKARADGGYNSAAYKKAKEAIAEQFMKIRFTAKQVERLCSILREQ
VDSVRKIEREIYDIAVNRVGVPREQFLDKFRGHEVEAAWVDTFSASNAAWAETWARNIPA
INELQQKLVAIQDAVSLPLNDLRAINKQMVSGENRARLAKREMIEANLRLVISIAKKYTN
RGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM
IETINKMNRISRQILQETGIEPDPATLAERMEMPEEKIRKILKIAKEPISMETPIGDDDD
SHLGDFIEDNHTLAPQDAAQYSSLRFVTKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEV
GKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaagaaggtttctcctcaaaaggcaactgtaaaagaagcgaaagtaaacacc
gtggttaagaagacagaatccaagaaaacagcacctgttgctgaaaagcctgtgagcaag
aaagccgctgcgcccgcacccgcacctgttgtggccgatgaaacgcccaagcgtggccgc
aagcccaaagtggttgaagctgctgccgagccagtggccaaggcagccaagcctgtagcc
aaagcggcggccaagcccgccaaggtggcggagcccgttgctgttgaggaagtgcagccc
aaaaaacgcggtcgcaaacccaaggtggttgaacaggcggcgccagcgcaaaccgctgaa
gcccccaaggggcgtggacgcccgcccaaggctggcaagcccaaggctgaagaagaggac
gacgaggacatcgattccggtgcagacgcatcgatcgactccgacgatgtgcccgaagac
gacgattcagatgccaaaaaagccgacctggtgatcatgcccaagcgtggtcgcggctcc
aaggccaaagacaaagcgctgatcaactcggcttacctcagctcggccaacgccactgtt
gaagaactcgaattgcgccgcaaccagcttaaaaccctgatcaaaatgggtaaagagcgc
ggctacctgacctttgctgaaatcaacgaccacttgcctgacgatgtaaccgacggcgaa
gtgatcgaagccatggtcagcaccttccacgacatgggtatcactgtttacgaacaggcc
cctgacgcggaagccttgttgatgaacgacaacgcaccagtgggcacttctgccgaagac
gcagaagaagaagctgaagccgcgttgagcaacgttgactctgaatttggccgcaccacc
gaccccgttcgcatgtacatgcgtgaaatgggtacggttgagttgttgactcgcgaaggc
gagattgaaattgccaagcgaattgaagctggcctgaaagacatggtgcaagccatttct
gcgtgcccagctattgtcgaagacgtggttggcctgggccagcgcattgctgaaggtttg
tcgacggtagatgaagtggttgacggcatcgttgacgactcaattacagacgacatggtt
gaagccgcagcgcctgaagaggttagtgacgacgaagacagcgatgacgaagaagagggc
aatgacggtggcaccacctccggcatgtcggcccgtcagctggaagaactcaagaagaat
tcgctggtggtttttgctgaaattgaaaagcagtttgccaagctgaaaaaagcacgtgca
gatggtggctacaattctgcggcctacaaaaaagccaaggaagcgattgccgaacagttc
atgaaaattcgcttcactgccaagcaggttgagcgcctgtgcagcattttgcgtgagcaa
gtggacagtgttcgcaaaattgaacgtgaaatttacgacatcgccgtaaaccgcgtgggc
gtgccccgcgagcagttcctcgataaattccgtggtcatgaagtggaagcggcctgggta
gatacattcagcgcatcgaacgcggcttgggctgaaacctgggcgcgtaatattcctgcg
atcaacgaattgcagcaaaagctggttgccattcaagacgcggtttctttgcctttgaat
gacttgcgcgcgatcaacaaacaaatggtgtccggtgaaaaccgtgcccgtttggccaag
cgtgaaatgatcgaggccaacttgcgtttggtgatttcgattgccaagaagtacaccaac
cgtggcttgcaattcctggatttgatccaggaaggcaacgtgggcttgatgaaggcggtg
gacaagtttgaataccgccgtggctacaagttttcgacatatgccacctggtggattcgc
caggccattacccgctccattgctgaccaggcacgcaccattcgtattccggtgcacatg
atcgaaaccatcaacaagatgaaccgtatcagccgtcaaattctgcaggaaaccggtatt
gagcccgatcccgccaccttggccgagcgcatggaaatgcccgaggaaaagattcgcaag
attctgaaaatcgcgaaagaacccatttcgatggaaacaccgattggcgacgacgacgat
tctcacttgggcgatttcatcgaagacaaccacactttggccccgcaagacgctgcacag
tacagcagcctgcgctttgtgaccaaagatgtactcgattcgctgaccccacgcgaggcg
aaagtgctgcgcatgcgttttggtattgagatgagcaccgaccacacgctggaagaagtg
ggcaagcagtttgatgtaacccgcgagcggattcgtcaaattgaagccaaggcacttcgc
aagctgcgtcaccccagccgttcagacaagctgaaaagcttcctggaaggcgaataa
DBGET
integrated database retrieval system
