Limnobacter profundi: HKT17_13715
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Entry
HKT17_13715 CDS
T06583
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
limn
Limnobacter profundi
Pathway
limn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HKT17_13715 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limn03400
]
HKT17_13715 (mutM)
Enzymes [BR:
limn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HKT17_13715 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HKT17_13715 (mutM)
DNA repair and recombination proteins [BR:
limn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HKT17_13715 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7573
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
QJR30678
LinkDB
All DBs
Position
complement(2936136..2936954)
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AA seq
272 aa
AA seq
DB search
MPELPEVEITKRGVDLHFTGQRLLACTVRQPRLRWPVPVQVQSCVKQILQGVERRSKYML
MDFGGQVLVVHLGMSGSMKIVSASTPWDKHDHIEWNFGEKVLRYNDPRRFGSVEYVEKAP
GWENSFIRFAKLGPEPFSEAFTPESFFKATRGKKVSIKALLLSGLAVVGVGNIYACEALF
RSAIRPGKAAGRLSRANTQALHAAVVAVLTEAIERGGSTLRNFQAIDGELGHFQLHCDVY
GREGQPCKRCGGAVKRRVMNQRSTFYCAQCQE
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaggtagaaatcaccaaaagaggcgtagacctgcatttcacaggg
cagcgcctgttggcttgcaccgtgcggcaaccccgtttgcgttggcccgtgccggttcaa
gtgcaaagttgtgtaaagcagatattgcaaggcgtggagcgccgctcgaaatacatgttg
atggatttcggtgggcaagtgttggtggtgcatttgggcatgtcgggttccatgaaaatt
gtgagcgccagcactccgtgggacaagcacgatcacattgaatggaattttggggagaag
gttctgcgttacaacgacccgcgccgctttggcagtgtggagtacgtcgaaaaagcgccg
ggttgggaaaacagttttatacggtttgcaaaactggggcctgagcctttcagtgaggca
ttcacacccgaatcgtttttcaaggccacgcgcggcaaaaaagtgtcgatcaaggccttg
ctgttaagtgggcttgctgtagttggtgtgggtaatatttatgcgtgcgaggcgctgttt
cgcagtgcaatccgacccggtaaagccgcggggcggctgagtagggcaaatacgcaggcc
ttgcatgcagcggtggttgctgttttaactgaggcgattgagcggggtggttcaaccctg
cgtaattttcaagccattgatggcgagttgggacattttcagttgcattgtgatgtgtat
ggccgcgaggggcagccttgcaagcgctgtgggggcgctgtgaaacgccgtgtaatgaac
cagcgcagcacgttttattgcgcgcaatgtcaggaatga
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