Limnobacter profundi: HKT17_14250
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Entry
HKT17_14250 CDS
T06583
Name
(GenBank) RHS repeat protein
Organism
limn
Limnobacter profundi
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
TEN_YD-shell
TcdB_toxin_midN
OCRE
Med18
Motif
Other DBs
NCBI-ProteinID:
QJR30778
LinkDB
All DBs
Position
complement(3040773..3045800)
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AA seq
1675 aa
AA seq
DB search
MDFVQLPVFGQSVKSGLGLRFRGNYWAFFDKRTELSPWLALHRESINDTELDELMLHGFP
RTRTGDTVDCKVLTHFGLVQGDMYADGFFVGRSERQRTAAFTGDLLVIKIPLTANPQKDL
LNPNSIYWASETKLLAHQAGSTEYERGKALVEMATILLARWREHDAQNLEFKVKHRIHEL
WEEGKAVGQGAGAAAMGFIEGLWSLIKISVEFTVNAVKATCAGFETLINSNFAQIQQMLV
GAGMAAYNTAQEMIAALKEGMRLFNLIGSDRLLRTGLFEFLDGYSESVPHLRRLRNAATV
VVAIGIEVLLALATFGGSLAVGAARVGARVANGASKVGPFTQAAIRHLANYAKALEKAQA
SKLRSIDGAPSGNRSSKNSTTTTAAAKPAEPGKPAASNTQGANTPKVADTKTAGEPISMI
NGEELLQLLDCSMPGLVGLNWQRTYRSSLAEQGFNAGLGAGWAHPLSQHLLAQAGALESS
LNYIDEEGRTVYFKPLKVGQRCTNTSEFLTLTRTAETAYRLQASNGLGLAWHFEHLELAQ
GSEPTQNETQRFSLVRIEDAFGNALAIDYTHGVPTHLYSSQSSWVLGYNEQGLLAQIAQL
AKGCSADETDTALEQNQLGLNQLILVQYRYNAQGQLVAVSDAAGFEEQYAYNKRNVLVQR
TLKSGYNIYFEWEQAGEHSRCVRQWGDPVGGQPTYHYRFEWDIHGTATNVAMDSRGARTE
YQFNAQGLPVLEKGPEGAVTRTTYNSNGQVLERIDALGHREQFQYNSQGHLVAYTNKLGQ
LHRFEVNAQGQVLKHINAEGHVRSNTYTAEGLLASHTDATGATTRYRYNHLGLLCEVTNP
LGQSTRMLYNAQGQLQAQTNALGQSNTYQFDAWGRLAGISNPLGRSAYYAYDLLGRCTRA
TNHEGLSTEYSYGPLGQLERITDPTGRSAVYEYADKLSQPTARIDAQGFTLRYRYDSERN
LIELQNENGQSCHFEYDLAERLTKESGFDGRVQTYQYNAVGHLLEKQEWGVLHGAANGLC
LDQIPKQPLAYSRYKRDALGRLLKARQSDGEEATFAYNPQGQLVQASNAHRTLQWEVDAE
GRVLAERQDQHRIDHQYNPAGWLKQTSWGAMGGGLPSGALAYQYNALGLLSEINFNGELL
AQFERDTLGREVVRKLGNQVHTQSLYDPQGRLVGQVNRRANGSKTERRDELSPTVSRRRY
CYNQSNQLVRIDDQGHGTSLYHYDLLDRLRVVEGPTPEAFLFDPASNLLEALEGQEATDA
QASRALPEPASPNARRPQQTPGNRLKRQGNRRFNYDDRGNRVEEIVERGPRQGQVTRYRY
NAQNQLVEVNVAGVITRYAYDALGRRISKTTEPGAQQSTISTTTFYWNGDVLLSEINEGV
SNTSSDGSTKPSRSYLFEPFSFKPLALVQHGHVYHYHTDHIGTPREITNAKAEVVWSSTF
KTYGALALAHVNEVDNPLRFQGQYYDEETGLHYNRHRYYDPNSGQFTTQDPIGLLGGMNA
YQYAPNPMTWVDPWGLSCKEGNESEFSGDSRTSPWLSDKRVGVVSHLETFRGGGSYLIPK
SAYERFVAGKPMAGDPTGQFITTKSAMDKLLGKANGSLDFIKKELSIPENAWNEELMRVD
VHNPLLHNARFPSGFERGANELFKWGGYTKGGMPEIVVDQFPIGGYSANTIGVKP
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgttcaacttcccgtttttggtcaatcggtaaagtctggtttggggctgcgt
tttcgcggcaactattgggcgtttttcgacaaacgcaccgaactgtcaccctggttggcg
ctgcacagagagtcgatcaacgacaccgaactcgatgaactgatgctgcatgggtttccg
cgcacgcgcaccggcgacaccgtcgattgcaaagtgcttacccactttggcctggtgcag
ggcgatatgtatgccgatggttttttcgtgggccgcagcgaaaggcaacgcacagccgca
ttcactggcgatttgctggtgataaaaataccgctgacagccaacccgcaaaaagacctg
ctcaaccccaacagcatttactgggccagtgaaaccaaactgcttgcacaccaagctggc
agcacggaatacgaacgcggaaaagcactggttgaaatggccactattttgctggcccgc
tggcgcgaacacgatgcacaaaaccttgagttcaaggtgaaacaccgcattcatgaactg
tgggaagaaggcaaagccgttgggcagggcgctggcgctgcagccatgggctttatcgaa
ggtttgtggagcctgatcaagatcagtgttgagttcactgtgaatgcagtaaaggccacc
tgcgctgggttcgagacgctgatcaattccaactttgcgcaaattcagcaaatgctggtg
ggtgcgggcatggcggcctacaacaccgcgcaagaaatgatcgcggccttgaaggaaggc
atgcgcctgttcaacctgattggatcagatcgcctgttgcgcacaggcctgtttgaattt
ctggacggatattctgaaagcgtaccccacctgcggcgcttgcgtaatgcagccacggtg
gtggtggccataggcattgaagtgctgctggcactggccacattcggcggaagccttgcc
gtgggcgcagcgcgagtgggtgccagggttgcaaacggtgccagcaaagtgggcccattt
acccaggctgcaattagacacctggccaattacgccaaggcgcttgaaaaggcacaggcc
tccaaactgcgttcaatcgatggtgcgccctctggcaaccgatcttcaaaaaacagcacc
accaccaccgcagcggcaaagcctgctgagcccggcaagccggcagcgagcaatacacaa
ggtgcaaacacacccaaagtggccgacaccaaaacagccggtgaacccatcagcatgatc
aacggtgaagaactgctgcaattgctcgattgctcaatgcccggcctggtgggcttgaac
tggcagcgcacttaccgcagcagccttgcagaacaaggattcaatgcagggcttggggcc
ggttgggcgcaccccttaagccagcacctgctagcccaggcgggtgcactggaaagcagc
ctgaactacatcgacgaggaaggccgcacggtttacttcaagcccttgaaggtaggccag
cgctgcaccaacaccagtgaatttttaaccctgacgcgcaccgcagaaacagcctaccgt
ctgcaagccagcaacgggttgggcttggcctggcactttgaacatcttgaattggcgcag
ggcagcgaacccacgcaaaacgaaacacagcgcttctcgctggttcgcattgaagacgcc
tttggcaatgcacttgctatcgactacacgcacggcgttcccacccacctctacagcagc
caaagcagttgggtactgggttacaacgaacaaggcttgcttgcacaaattgcccaactg
gccaaaggttgttcagcagacgaaaccgacaccgcccttgaacaaaaccaattgggtttg
aatcaactgatactggtgcaataccgctacaacgcacagggccagcttgtggccgtaagc
gatgctgcgggctttgaagaacaatacgcctacaacaaacgcaatgtgctggttcagcgc
acgctaaaaagcggttacaacatttactttgaatgggagcaggcgggcgaacactcccgc
tgcgtgcgccagtggggcgaccctgtgggtggtcaacccacctaccactaccggtttgaa
tgggatattcacggcacggctaccaacgttgccatggatagccgcggtgcacgcactgaa
taccagttcaatgcccaaggcctacccgtgcttgaaaagggccctgaaggcgctgttaca
cgcaccacctacaacagcaatgggcaagtgttggaacgcattgatgcgctgggccaccga
gagcagtttcagtacaacagccaaggccatttggtggcgtacaccaacaagcttgggcag
ctgcacaggtttgaagtcaacgcacaggggcaggtgttaaagcacatcaatgctgaaggc
catgtgcgcagcaacacttacacagccgaaggtttgctggccagccacaccgatgccaca
ggtgccaccactcgctaccgttacaaccacctgggtttgttgtgtgaagtaacaaacccc
ttgggccaaagcacgcgcatgttgtacaacgcgcaaggccagctgcaagcgcaaaccaat
gcactggggcaaagcaacacttaccaattcgacgcctgggggcggctggcaggcataagc
aacccgctggggcgcagtgcctattacgcctacgacttactgggtcgatgcacccgcgcc
accaaccacgagggcctaagcaccgaatacagctacggcccactgggccagcttgaacgt
attaccgaccccaccggccgcagcgcggtttacgaatatgccgacaaattaagccagccc
accgcacgcattgatgcacaaggttttacccttcgctaccgctacgacagcgaacgcaat
ttgatcgaactgcaaaacgaaaacggtcaaagctgccactttgaatacgaccttgccgaa
cgcttaaccaaagaaagcggcttcgatggccgggtgcaaacctaccagtacaacgcagtg
ggccacctgcttgaaaagcaggaatggggcgtgttacacggtgccgcaaacgggctgtgt
ctggatcaaatacccaagcagccactggcctactcacgctacaagcgcgatgccttgggc
cgattgttgaaagcccggcaaagcgatggtgaagaagccacctttgcttacaacccgcaa
ggccagttggttcaagccagcaacgcgcaccgcaccctgcaatgggaggtagatgccgaa
ggccgcgtactggccgagcgtcaagaccagcatcgaattgatcaccaatacaacccggca
ggctggctcaagcaaaccagctggggcgcaatgggtggtgggctaccttcgggtgctttg
gcctaccagtacaacgccttgggtttgctcagcgaaattaacttcaacggtgaactactg
gcgcagttcgagcgcgacaccctgggccgtgaagtggtgcgcaagctgggcaaccaggtt
cacacccaaagcctgtacgacccacagggcaggctggtggggcaggtaaatcgcagagca
aacggttctaaaaccgaacgaagggatgaactttcccccaccgtttcccgccggcgctac
tgctacaaccagagcaaccaactggtacgcattgacgaccaaggccatggcaccagcctt
taccactacgatctgctggaccgcttgcgcgtggtggaaggccccacaccggaagcattt
ttattcgaccccgcaagcaatttgcttgaggcgctggaggggcaagaggccaccgatgca
caagcaagccgtgccttgccagagcctgctagccccaatgcccgcaggccacaacaaacc
ccgggcaacaggttaaagcgccaaggcaacaggcgctttaattacgacgatcgcggcaac
cgcgtagaagaaattgttgagcgcggcccacgccaagggcaggtaacgcgctaccgctac
aacgcccaaaaccagcttgttgaagtgaacgtggcgggggttattacccgctacgcctac
gacgcactgggcaggcggattagtaaaaccaccgaacccggtgcacagcaaagcaccatc
agcactactacgttttactggaatggtgatgtgctgctgagtgaaatcaatgagggtgtg
agcaacaccagcagtgatggcagtaccaaaccgagccgctcttatttgtttgaacctttc
agcttcaaaccgctggccttggtgcaacacgggcatgtgtaccactaccacaccgaccac
atcggcaccccgcgagaaattaccaacgcaaaagccgaagttgtgtggtccagcaccttc
aaaacctacggtgcgctggcccttgcgcatgtgaacgaggtggataacccactgcggttt
caaggtcagtattacgacgaagaaacggggctacactacaacaggcaccgctactacgac
cccaacagcgggcagttcaccacgcaagaccccattggtttgctgggtggaatgaatgcg
taccagtacgcaccgaaccccatgacatgggtggatccgtgggggttgagttgtaaggaa
ggaaatgagtctgaattctctggagattctagaacaagcccttggttgtcagacaagaga
gttggtgttgtttcacacttggaaaccttcagaggtggaggttcctatttgatccccaaa
agtgcttatgaacgattcgtagcaggcaaacctatggccggagatcctacaggtcaattt
ataactactaaatcggcaatggataagttattaggtaaagccaatggaagcttggatttt
attaaaaaggaactaagtatccccgaaaatgcttggaatgaagaacttatgcgagttgat
gttcacaatcctcttttgcataacgctaggtttccgtctggttttgagcgtggagctaat
gaattatttaaatggggcggatatacaaagggaggcatgccagagatagttgtggatcag
ttccccatcggcggctattcggcaaatacgattggagttaaaccataa
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