Limnobacter profundi: HKT17_14335
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Entry
HKT17_14335 CDS
T06583
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
limn
Limnobacter profundi
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
limn03021
]
HKT17_14335 (rpoH)
Transcription machinery [BR:
limn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HKT17_14335 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
IF2_N
KORA
Phage_terminase
HTH_3
Motif
Other DBs
NCBI-ProteinID:
QJR30793
LinkDB
All DBs
Position
3062375..3063301
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AA seq
308 aa
AA seq
DB search
MTTALTLANPRAAGSSLAVRDPWALVARGPLGNLDAYISATHQIPMLSPEEEVELGERLQ
RDNDLEAARRLVLSHLRLVVAVARQYLGYGLPHADLIQEGNIGLMKAVKRFDPTRGVRLV
SFALHWIKAEIHEYIIRNWRMVKMITTKAHRKLFFNLNSFKKYGQTLSPDQINEVASELN
VRPEDVYDMERRMAGHEFSLDPVVDVDSEENSYNPVRYLAAEGAEPTEVLEGVNMERLHS
EGLDLALASLDERSQRIISSRWLAGDNAKTLHDLAAELGVSAERVRQIETQAMKKMKTAL
LKYEQGEV
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgcattgacccttgctaacccacgcgccgctggcagcagccttgctgtgcgc
gacccatgggcactggtggcccgtggcccgcttggcaacctagatgcctatatttcagcc
acacaccaaattcccatgctgtcgcccgaggaagaagttgaacttggcgaacgcctgcaa
cgcgacaacgatcttgaagcggcccgccgcctggtgctcagccacctgcgactggtggtt
gcagtggcacgccagtatctgggctatggcttgccccacgccgacctgattcaggaaggc
aatattggtctgatgaaagccgtgaagcgattcgaccccacgcgcggcgtgcggctggtc
agctttgcgctgcactggatcaaggcagaaattcatgaatacattatccgcaactggcgc
atggtgaaaatgatcaccaccaaagcgcaccgcaagctgtttttcaacctgaacagcttc
aagaagtacggccaaaccctgtcgcctgatcaaatcaacgaggtggccagtgagttgaat
gtacgccccgaagatgtgtacgacatggaacgccgcatggcgggccatgaattcagcctg
gacccggtggtagacgtggacagcgaagaaaacagttacaaccccgtgcgctatttggcc
gccgaaggtgccgagcccaccgaggtgctggaaggtgtcaacatggagcgcctgcacagc
gaaggtctggacctggccttggccagcctggacgagcgcagccagcgcattatttccagc
cgctggttggccggtgacaacgccaaaaccctgcacgacctggccgcagagctgggtgtg
tcggccgagcgggttcgccaaattgaaacccaggccatgaaaaaaatgaaaaccgctttg
ctgaaatatgaacagggcgaggtttaa
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