Limnohabitans sp. TEGF004: LTEGF4_02910
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Entry
LTEGF4_02910 CDS
T11140
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTEGF4_02910 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limt03019
]
LTEGF4_02910 (groL)
03110 Chaperones and folding catalysts [BR:
limt03110
]
LTEGF4_02910 (groL)
03029 Mitochondrial biogenesis [BR:
limt03029
]
LTEGF4_02910 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
limt04147
]
LTEGF4_02910 (groL)
Enzymes [BR:
limt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
LTEGF4_02910 (groL)
Messenger RNA biogenesis [BR:
limt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
LTEGF4_02910 (groL)
Chaperones and folding catalysts [BR:
limt03110
]
Heat shock proteins
HSP60 / Chaperonin
LTEGF4_02910 (groL)
Mitochondrial biogenesis [BR:
limt03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
LTEGF4_02910 (groL)
Exosome [BR:
limt04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LTEGF4_02910 (groL)
Exosomal proteins of other body fluids (saliva and urine)
LTEGF4_02910 (groL)
Exosomal proteins of breast cancer cells
LTEGF4_02910 (groL)
Exosomal proteins of colorectal cancer cells
LTEGF4_02910 (groL)
Exosomal proteins of bladder cancer cells
LTEGF4_02910 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
divDNAB
Motif
Other DBs
NCBI-ProteinID:
BDU54610
LinkDB
All DBs
Position
complement(269468..271120)
Genome browser
AA seq
550 aa
AA seq
DB search
MAAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI
ELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGI
DKAVAALIEELKKATKATTTTKEIAQVGSISANSDHSIGEIIANAMEKVGKEGVITVEDG
KSLNNELDVVEGMQFDRGYLSPYFINSPEKQAALLDNPFVLLFDKKISNIRDLLPTLEAV
AKAGRPLLIIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKV
IAEEVGLTLEKVTLADLGQAKRIEVGKENTIIIDGAGAAADIEARVKQVRVQIEEATSDY
DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALL
RARQTAGTIKGDNADQDAGIKLVLKAIEAPLREIVYNAGGEPSVVVNAVLAGTGNYGFNA
ANDTYGDMIEMGILDPTKVTRTALQNAASVASLMLTTECMVSEAPKDEAGGGMPDMGGMG
GMGGMGGMGM
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaagacgtaattttcggcggcgaagcccgcgcacgcatggttgaaggcgtg
aacattttggccaacgcggtcaaagtgactttgggccctaagggtcgtaacgtggttctg
gagcgttctttcggcgcccctaccgtgaccaaagacggcgtgtctgtggccaaagaaatc
gaactcaaagacaagttgcaaaacatgggcgctcagatggtcaaggaagttgcttccaag
acttctgacaacgctggtgacggcactacaaccgccaccgtgttggctcaagccatcgtg
cgcgaaggcatgaagtacgttgccgccggcatgaaccccatggacttgaagcgcggtatc
gacaaagctgttgcagcgttgatcgaagagttgaagaaagccaccaaggccaccacaacc
accaaagaaatcgctcaagtcggttctatctctgctaacagcgaccacagcattggcgag
atcatcgctaacgccatggaaaaagtgggcaaagaaggcgtgatcactgtggaagacggc
aagtctttgaacaacgaactcgacgttgtggaaggcatgcaattcgaccgcggctacctg
tctccttacttcatcaacagcccagaaaagcaagctgctttgttggacaacccattcgtg
ttgttgtttgacaagaagatcagcaacatccgcgacttgttgcctacattggaagccgtt
gcaaaagctggccgtcctttgttgatcattgctgaagaagtcgaaggcgaagccttggct
actttggtggtcaacaccatccgtggcatcttgaaggttgtggctgtcaaggctccaggc
tttggcgatcgtcgcaaagccatgttggaagacatcgctatcttgaccggcggcaaagtg
attgccgaagaagttggcttgacactcgaaaaagtgactctggctgacctcggccaagcc
aagcgcatcgaagtgggcaaagaaaacaccatcatcatcgacggtgctggtgcagctgct
gacatcgaagcccgcgtcaaacaagtgcgcgtgcaaatcgaagaagccacatctgactac
gaccgtgaaaaactgcaagaacgcgtggccaagttggctggcggtgttgccgtgatcaag
gttggcgctgccaccgaagtcgagatgaaagaaaagaaagcccgcgtcgaagacgccctg
catgccactcgcgctgctgtggaagaaggcatcgtggctggtggcggcgtggcattgctg
cgtgcacgtcaaacagctggcaccatcaaaggtgacaacgctgaccaagacgccggtatc
aaactggtgttgaaagccatcgaagccccattgcgcgaaatcgtttacaacgcaggtggc
gagccatccgttgtggtgaacgcagtgttggctggtacaggcaactacggcttcaacgct
gccaacgacacctacggtgacatgatcgaaatgggcatcttggacccaaccaaagtgacc
cgcactgcattgcaaaacgcagcgtcagtggctagcttgatgttgaccaccgagtgcatg
gtttcagaagcaccaaaagacgaagccggcggcggcatgcctgatatgggtggcatgggc
ggcatgggtggtatgggcggcatgggcatgtaa
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