Limnohabitans sp. TEGF004: LTEGF4_05260
Help
Entry
LTEGF4_05260 CDS
T11140
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LTEGF4_05260 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limt03400
]
LTEGF4_05260 (recD)
Enzymes [BR:
limt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LTEGF4_05260 (recD)
DNA repair and recombination proteins [BR:
limt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LTEGF4_05260 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
Viral_helicase1
AAA_11
Helicase_RecD
AAA_22
SH3_13
UvrD-helicase
SLFN-g3_helicase
UvrD_C
FtsK_SpoIIIE
nSTAND3
AAA_7
AAA_16
PhoH
PIF1
DEAD
T2SSE
ATPase
NPHP3_N
Mg_chelatase
AAA_29
NTPase_1
TrwB_AAD_bind
SRP54
ResIII
DO-GTPase1
Rad17
AAA_5
CbiA
AAA_28
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDU54845
LinkDB
All DBs
Position
complement(522965..524788)
Genome browser
AA seq
607 aa
AA seq
DB search
MTMLKDLLKQPWGQAHATPLTGLDTALANLLHSKQPSDDPRHLWLAALTSHQWGRGHACL
DLATLQTQVAELLGWTDEQTATLPSKLHEAAATLPWTQGDASPLVLTEDTQGARLYLRRA
WKAEQNIRLQLAQRLALPCEVPADLQQRLDELFTPTTDGTPDMQRLACEVAAQNRITLIT
GGPGTGKTTTVVKLLSLLVRTSPRELQIHLAAPTGKAAARLTESISNALTKMPADKRPHM
PSQAQTLHRLLQTNSRANQVHQLATDVVVVDEASMIDLEMMARLLQAVPPTARLILLGDK
DQLASVEAGAVMSQLCTGSLLKAQTVTLIHSHRFDAKSGIGQWARTVNADAADNTPALKA
LWNAAPDWLATLPLQQSVLLDEGGDAAEPDVTRLQLNNASDPKLAVGLRYGWRNWLALLD
AHRPSKTAPAAPCSDAQAVALLKAFTEFCVLCAVREGPLGVVQLNAQVEHALGLGQSAWY
AGRPVMVTRNDYALELMNGDIGLCLPGPDGVLRVAFPAVDGGVRWVMPSRLDSVETVFAM
TVHKSQGSEFTHVLLVIPALESPVLTRELVYTGLTRAKKRLTLWAPQLGVLWNGCARRVL
RSGGLGI
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgctcaaagacctgctgaaacaaccttggggacaagcgcacgccacgccgctg
accggcttagacacagccttggccaacttgctgcacagcaagcaacccagcgatgaccca
cgccacttgtggttagcagccctcaccagccaccaatggggacgcggccatgcgtgccta
gaccttgccacgctacaaacgcaagtcgctgagttgttgggctggaccgacgaacaaacc
gccacactcccaagcaagctgcatgaagccgccgccaccttgccgtggacgcaaggcgat
gcttcgccgctggtgctgaccgaagacacacaaggcgcacgtttgtatttacgccgcgca
tggaaggctgagcaaaacattcgattgcaactggcgcagcgcttagccctgccctgcgaa
gtgcctgcggatttgcaacaacgcttagacgagttgttcacgcccaccaccgatggcacg
cctgacatgcaacgcttggcctgcgaggtggccgcgcaaaaccgcatcaccctcatcacc
ggcgggcccggcacgggcaaaaccaccacggtggtgaaactgctgtcgctgttagtgcgc
acatcgccacgcgagctgcaaattcacttggccgcccccacgggcaaagcagcggcgcgt
ttgaccgagtcgatcagcaacgcactcaccaagatgcccgccgataagcgcccgcacatg
cccagccaagcgcaaacgctgcaccgcttgttgcaaaccaatagccgcgcaaaccaagtg
catcagcttgccaccgatgtggtggtggtcgacgaagcgtcgatgattgacttagagatg
atggcccgcctgctgcaagctgtgccgccgactgcgcgtttgattttgctgggcgacaaa
gaccagctcgcgtctgtagaagctggtgcggtcatgtcccagctgtgcacgggcagtttg
ctcaaagctcaaaccgtcacgctcattcacagccaccgcttcgatgccaagagcggcatt
ggccaatgggcacgcaccgtgaacgcggacgcggccgacaacacacccgccctcaaagcc
ctgtggaacgctgcacccgattggctggccacgttgcctttgcaacaaagcgttctcctt
gacgaagggggcgatgccgcagaacccgacgtgacccgcctgcaactgaacaatgccagc
gaccccaagctggccgtgggcctgcgctacggttggcgcaattggctggctttgctagac
gcacaccgccccagtaaaacagcgccagctgcaccgtgcagcgatgcgcaagcggtggcg
ttgctcaaagccttcaccgagttttgtgtgttgtgcgcggtgcgcgaaggcccgctgggc
gtggtgcagctcaatgcacaagtcgagcacgcgctgggcttaggccaaagtgcttggtat
gccggtcgccctgtgatggtgacgcgaaacgactacgcgctagaactgatgaacggcgac
attggcctgtgcctgcccgggcctgacggtgtgttgcgcgtggccttccctgcggtggat
ggtggtgtgcgttgggtcatgccctcgcgtcttgacagtgtggaaaccgtgtttgccatg
acggtgcacaaatcacagggctcagagttcacgcatgtgttgctggtgatcccagcactt
gagtcccccgtgctcacgcgcgagctggtgtacaccggcctcacacgcgccaaaaagcgc
ctgacgctgtgggccccgcagttgggcgtgctgtggaatggctgtgcgcggcgcgtgttg
cgcagcggtggtttgggcatttaa
DBGET
integrated database retrieval system
