Limnohabitans sp. TEGF004: LTEGF4_06030
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Entry
LTEGF4_06030 CDS
T11140
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTEGF4_06030 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limt03019
]
LTEGF4_06030 (rhlE_1)
Enzymes [BR:
limt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LTEGF4_06030 (rhlE_1)
Messenger RNA biogenesis [BR:
limt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LTEGF4_06030 (rhlE_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
BDU54922
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All DBs
Position
609931..611427
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AA seq
498 aa
AA seq
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MRQYAPDMTTSFSNLQLAPALARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGK
TAAFSLPLLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIKQYAVHTNLRSMVV
FGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPD
LQRILSHLPKTRTTLLFSATFSTEIKRLAGSYLQNPVTIEVARPNETAATITQQFYSVSV
DDKYNALRHLIKANDMKQAFVFCNSKLGCARLARSLERDGFRTSALHGDKSQDERLKALE
GFKKGEVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGALGKAISFV
SGSDQRLVGDIEKLLKTKITLETVSVEQDRLRERREPRNDSRESRGDAPRGERSESSSRP
REGYAPRDARPREQDSRRSREVGYVPAPRIKNDPFFDKPYEAPVRSAEAAAPAAPDPLRK
SANIKPKRVMAALFKSTT
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgcgacaatatgccccagacatgacgacctctttttctaatttgcagctggcccccgcg
ctggcacgtgccgtagccgaaatgggctacgaatccatgacccccatccaagcccaggcc
attcccgtggttctgaccggccaagacgtgatgggcgccgcgcaaaccggcaccggcaaa
accgcagcgttctcgctgccactgctgcaacgtttgctcaaacacgaaaacagctccacc
tcgcccgcacgtcaccccgtgcgcgctttggtgctgttgcccacccgcgagctggccgac
caagtggcccagcaaatcaaacaatacgccgtgcacaccaacctgcgcagcatggtggtg
tttggcggcatggacatgaagccccaaaccatcgagctgaaaaagggcgtcgaagttttg
gtggccacgcccggccgtttgctagaccacatcgaagccaagaacgtggtgctcaaccaa
gtggaatacgtggtgctcgacgaagccgaccgcatgttggacatcggcttcttgccagac
ctgcaacgcatcctgagccacttgcccaagacgcgcaccacgctgttgttctcggccacg
ttctccaccgagatcaaacgcttggctggcagctatttgcaaaaccccgtcaccattgaa
gtggcgcgtcccaatgagaccgccgccaccatcacgcagcagttttacagcgtgagcgtg
gacgacaagtacaacgccttgcgccacctcatcaaagccaacgacatgaagcaagccttt
gtgttttgcaacagcaaacttggctgcgcccggttggcccgctctctagagcgtgacggt
tttcgcaccagcgccttgcacggcgacaagagccaagacgaacgcctgaaagccctcgaa
ggcttcaaaaaaggcgaagtcgatttgctcgtctgtaccgatgtggccgcacgtggcttg
gacatcaaagacgtgccagcggtgttcaactttgacatccccttcaacgccgaagactat
gtgcaccgcattggccgcacaggccgcgccggtgctttgggcaaagccatcagctttgtg
tcgggcagcgaccaacgcttggtgggcgacattgagaaattgctcaagaccaagataacg
ttagaaaccgtgagcgtggagcaagaccgcttgcgtgagcgtcgtgagccacgcaatgat
tcacgcgaatctcgcggtgatgcacctcgcggcgagcgttcagagtcttccagtcgtcct
cgcgaaggctatgccccgcgcgatgcacgcccccgcgagcaagacagccgccgcagccgc
gaagtgggctacgtgcccgcaccgcgtatcaagaacgacccgttctttgacaagccctac
gaagcacctgtgcgcagcgcagaggccgcagcacctgccgcacccgacccactgcgcaag
tcggccaacatcaagcccaagcgggtgatggcggctttgttcaagtccaccacttaa
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