Limnohabitans sp. TEGF004: LTEGF4_06070
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Entry
LTEGF4_06070 CDS
T11140
Name
(GenBank) helicase
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
limt Limnohabitans sp. TEGF004
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
limt03009
]
LTEGF4_06070
03012 Translation factors [BR:
limt03012
]
LTEGF4_06070
Enzymes [BR:
limt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LTEGF4_06070
5.6.2.5 RNA 5'-3' helicase
LTEGF4_06070
Ribosome biogenesis [BR:
limt03009
]
Eukaryotic type
Other ribosome biogenesis factors
LTEGF4_06070
Translation factors [BR:
limt03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
LTEGF4_06070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
UvrD-helicase
DEAD
AAA_16
AAA_22
ResIII
nSTAND3
Helicase_RecD
SLFN-g3_helicase
PhoH
HEM4
Flavi_DEAD
SMUBP-2_HCS1_1B
AAA_25
UvrD_C_2
T2SSE
AAA
AAA_5
NPHP3_N
DAP3
ATPase
NACHT
cobW
Zot
AAA_7
AAA_24
Herpes_ori_bp
Motif
Other DBs
NCBI-ProteinID:
BDU54926
LinkDB
All DBs
Position
612529..614529
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AA seq
666 aa
AA seq
DB search
MRALMQLEQKEDQAQFKLKNASASIKERRRRGLTWYPVTITQEDIGFGGKVVLELERPAH
RQDLHLFQVGKNASLFSNTAGPSSGHKESDRLTLSGVVTSVRRNKLVLTTTKEELPEWVM
NGSTLNGSTLGIDLTFDEVSYREMNQALSSVMAAHGNRLAELRDVLLGVRQASFREPQAD
DLFYPSALNDSQLVAVRHVISAQDVAIIHGPPGTGKTTTLVQAILETIRRERRVLVCAPS
NTAVDLLTEKLAERGVNVIRMGNPSRVSDLLLQHTLDAGVMAHPSYAKMHAMRQTAEQHR
DTASEHVRHFGFEERQHRQWLREEARTLRQAADDLERFMTEDVLESVQVITCTLVGASHR
HMRHLSFETVFIDEAAQALEPGCWIPIAKGQRIVLAGDHHQLPPTVKSEQAAREGLRETL
FEKCIQRQPNTARMLTTQYRMHEQIMGFSSEKFYGGQLVPHASVRHAGLEAYDLRFAPDL
PVEFIDTAGCGYQEVAIPESRSTANPEEAHLLLERLAQLLAPYDAAEHDEHQHTPLSIGV
IAPYRAQINYLKDAIEDSEVLNGLLQQRRLSVGTVDSFQGQERDIIAITLTRSNPQGEIG
FLSDIRRMNVGMTRARRKLLLVGDSTTLCRHPFFVELLAYVKGVGGYRTAHEMAELAFHQ
SVKDAS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgcactcatgcagctggagcaaaaggaagaccaggcgcagttcaagctcaaaaat
gccagtgccagcatcaaagagcggcgtcggcgtggcctgacctggtaccccgtgaccatc
acccaagaagacattggttttggtggcaaggtggtgttggagctagagcgccctgcacat
cggcaagacctgcatttgtttcaggtgggcaagaatgcttcgctgttcagcaatacagca
ggcccatcgtcaggccataaggaatctgacaggctcacgctgagcggcgttgtcaccagc
gtgcggcgcaacaagcttgtgctgaccaccaccaaagaagaactgcccgagtgggtgatg
aacggcagcacgctcaacggcagcacgctgggaattgacctcacctttgacgaggtgagc
taccgcgagatgaaccaagccctgagctcggtcatggccgcacacggcaaccgcttggcc
gaactgcgcgacgttctgctgggcgtcaggcaagccagctttcgcgagccccaagccgac
gacttgttttaccccagtgcgctcaacgactcgcagctagtggctgtgcgccatgtgatc
tcggcgcaagacgtggccatcatccatggcccgcccggcacgggcaaaaccaccacgctg
gtgcaagccattttggaaaccatccggcgtgagcggcgcgtgctggtgtgtgccccctcc
aacaccgccgtagacctgctgaccgaaaagctggccgagcgcggtgtgaatgtgatccgc
atgggcaaccccagccgcgtgtcggacctgctgcttcagcacacgctcgatgccggtgtg
atggcccaccccagctacgccaagatgcacgcgatgcgccaaaccgctgagcagcaccga
gacactgccagcgagcatgtgcgccactttggttttgaagagcgacagcaccgccaatgg
ctgcgcgaagaggcgcgcacgctgcgccaagccgccgacgacttagagcgcttcatgacc
gaggacgtgctcgaatcggtgcaggtcatcacctgcacgctggtgggtgccagccaccgc
cacatgcgccacctgagctttgagaccgtcttcattgacgaagccgctcaggccttggag
ccgggttgctggattcccattgccaagggccagcgcattgtgttggcgggcgatcaccac
caactgccgcccactgtgaaaagcgaacaagccgcccgcgaaggcctgcgcgaaaccctg
tttgaaaagtgcattcagcgccaacccaacacggcccgcatgctgactacgcaataccgc
atgcacgagcagatcatgggcttcagctccgagaagttttatggcggccaactggtgccg
cacgccagcgtgcgccacgctggcctagaggcgtatgacctgcgttttgcgcccgacctg
ccggtggagttcatcgacacggcgggttgcggttatcaagaagtggccattcctgagagc
cgttcaaccgccaaccccgaagaagcccacttgctgctggagcggctggcgcagctgctg
gcgccttacgacgccgccgaacacgacgaacaccaacacaccccgctgagcatcggcgtc
atcgcaccgtaccgagcccaaatcaactatttgaaagacgccatcgaagacagcgaagtg
ctgaatggtttgctgcagcaacgcaggctcagcgtgggcaccgtcgattcgtttcagggc
caagagcgcgacatcattgccatcaccttgacgcgcagcaacccccaaggcgagatcggc
tttctgtctgacatccgccgcatgaacgtgggcatgacccgcgcacggcgcaagctgttg
ctggtgggcgattcgaccacgctttgcaggcatccgttttttgtggagttgttggcttat
gtgaagggagtgggtggctatcgcacggcgcatgagatggccgaactggcattccaccaa
agcgttaaagacgcctcataa
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