Limnohabitans sp. TEGF004: LTEGF4_06750
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Entry
LTEGF4_06750 CDS
T11140
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTEGF4_06750 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limt03019
]
LTEGF4_06750 (rhlE-2)
Enzymes [BR:
limt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LTEGF4_06750 (rhlE-2)
Messenger RNA biogenesis [BR:
limt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LTEGF4_06750 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BDU54994
LinkDB
All DBs
Position
complement(681718..683571)
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AA seq
617 aa
AA seq
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MKFEDLNLAPAIQKAVAEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HKLTMSRSKENKFGVYGVRALVLTPTRELAAQVEESVRNYGKYLQLTSTVIFGGVGMNPQ
VARIKKGVDILVATPGRLLDLQQQGLLDLSTVEILVLDEADRMLDMGFIHDVKKILALVP
KDKQSLLFSATFSDEIRELANNLLKDPQSIQVTPSNTTVQRITQVVHPVGRGKKKALLAH
IINEHNWSQVLVFTRTKFGANNVAEFLTKNGISAMALHGNKSQTARTQALSGFKTGEIRA
LVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGSSGEAVSLVSLDEQGFMR
DIEIFTKQQVPVVPVADFGPDADEKAEPIAMGRQTLWGGIGKPPGRDVMAAAAKAARGEM
MQRIRDTKATGGGRNGGGGRGGQGGASEGRAPRPSGHVSRDRVGDRPARDGERAQFGDRP
ARSGERPARDGNRQPGNGQGQGARAPRQFDNRGPRNDAPRPPRDFDAPRAPRRDDDDFQP
RANAHLGTQSGVNAFGHKTQGGGQRQPDPTRTSVDLMTERKRGGGGGGYGRRPSGGGGGN
RSGGGGRSGGGGGGYGR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagatttaaatttggctccggccatccaaaaagctgtggccgaacagggc
tacgaaactcccacccccatccaagcccaagccattccagcggttctcgccggacacgac
ttgttggcaggtgcccaaaccggcaccggtaaaacagcggcattcaccttgcccatgttg
cacaagctcaccatgagccgcagcaaagaaaacaaatttggcgtgtatggcgtgcgcgcc
ttggtactgacccccactcgcgaactcgcggcccaagtggaagagtcggtgcgtaactac
ggcaaatacttgcaactcacctccaccgtcatctttggcggcgtgggcatgaaccctcaa
gtggcacgcatcaaaaaaggcgtggacattttggtagccacacccggccgcttgctcgac
ttgcaacagcaaggcttgctagatttgtccacagtggaaatcttggtactcgacgaagcc
gaccgcatgttggacatgggcttcatccacgacgtcaagaaaatcttggccttagtaccc
aaagacaagcaaagcttgttgttctcagccaccttcagcgacgaaattcgcgaactggcc
aacaatctgctgaaagacccacaaagcatccaagtcacgcctagcaacaccaccgtgcaa
cgcatcacgcaagtggttcaccctgtgggtcgcggcaagaaaaaggctttgctcgcacac
atcatcaacgaacacaactggagccaagtgctggtgttcacacgcaccaagtttggtgcc
aacaacgtggccgagttcttgaccaagaacggcatcagcgccatggcgttgcacggcaac
aagagccaaactgcacgtacccaagccttgtcgggcttcaagaccggcgaaatccgcgcc
ttggtggccaccgacattgccgcacgcggcattgacattgacgagttgccacacgtggtg
aactacgaaatccccaacatcagcgaagactatgtgcaccgcattggccgcacaggccgc
gctggctcaagcggtgaagccgtgagcttggtgtcgttggatgaacaaggtttcatgcgc
gacatcgaaatctttaccaaacaacaagtgcctgtggtgcctgtggccgacttcggccca
gacgctgacgaaaaggccgaacccatcgccatgggccgtcaaaccttgtggggcggtatc
ggcaagcccccaggccgtgacgtgatggcggctgcagccaaagccgctcgcggtgaaatg
atgcaacgtattcgcgacaccaaagccactggcggcggtcgcaatggtggtggcggtcgt
ggtggtcaaggtggcgcctccgaaggtcgcgcacctcgccccagcggccatgtgagccgt
gaccgcgtgggcgatcgtcccgcacgcgatggtgaacgcgcccagtttggtgaccgtcct
gcacgcagcggcgaacgcccagcacgtgatggcaaccgccagcctggcaatggacagggc
caaggtgctcgcgcccctcgccagtttgacaaccgtggcccacgcaacgacgcgccacgt
ccaccgcgtgactttgacgcgcctcgcgccccacgccgtgacgacgatgacttccaaccc
cgtgccaatgcacacttgggcacccaaagcggcgtgaacgcttttggccataaaacacaa
ggcggcggtcagcgtcagcccgaccccacacgcaccagcgtggacctcatgaccgaacgc
aaacgcggcggtggtggcggtggttatggccgtcgtcctagcggcggcggtggtggcaat
cgctcaggtggcggtggccgttcaggtggtggtggcggcggttacggccgttaa
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