Limnohabitans sp. TEGF004: LTEGF4_08620
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Entry
LTEGF4_08620 CDS
T11140
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
limt Limnohabitans sp. TEGF004
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
limt03009
]
LTEGF4_08620 (rlmD)
Enzymes [BR:
limt01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LTEGF4_08620 (rlmD)
Ribosome biogenesis [BR:
limt03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LTEGF4_08620 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
Methyltransf_31
TRM5-TYW2_MTfase
TRAM
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
BDU55181
LinkDB
All DBs
Position
863328..864722
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AA seq
464 aa
AA seq
DB search
MTQVTTEKQWPDNALTIESMDLEAQGVGHRADGKVVFVDGALPFEVVRANVHRKKDNWEK
ASLLEVLHESSQRVTPGCPHFGLHAGACGGCKMQHLDAAAQIAVKQRALEDNLWHLGKVK
AETILRPIQGPAWGYRYRARLSVRYVVKKGEVLVGFHERKSRYVADMRQCPILPPHVDAM
LLPLRKLIGCMEARETLPQIELACGDHVTAMVLRHMEPLSAHDMAALRDFAAKHNVQWWL
QSKGPDTVCLMEGALGEPLSYALPEFGITMPFKPTDFTQVNPHINRVLVTRALRLLDVQP
TERVIDWFCGLGNFTLPLATLAREVLGIEGSEALVARSGENYLFNQANRDKPLAPTSFVA
RNLFEMTPELLRQDGAADKWLVDPPREGAFSLVQALAEMHQQPELRQGWTPPKRIVYVSC
NPATLARDAGVLVNAAGYRMSFAGAVNMFPHTAHVESMAVFDLV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagtcacgacagaaaagcaatggcctgacaatgcgctcaccatcgaatcgatg
gacctagaagcgcaaggcgtgggccaccgcgccgatggcaaagtggtgtttgtggatggg
gctttgccctttgaggtggtgcgcgccaatgtgcaccgcaaaaaagacaactgggaaaaa
gcctcgctgctggaagtgctgcacgaatcgtcgcagcgcgtcacgcccggttgccctcac
tttggcttgcacgcaggggcgtgcggtggctgcaagatgcagcacttggatgcggctgca
caaatcgccgtcaagcaacgcgccttagaagacaacctctggcacttgggcaaggtcaaa
gcagaaaccattttgcgacccatccaaggccctgcatggggctaccgttaccgcgcccgt
ttgtcggtgcgctatgtggtgaaaaagggcgaagtgctggtgggctttcacgagcgcaag
agccgctatgtggccgacatgcgccagtgccccatcttgccgccccatgtggatgccatg
ctattgcctttgcgcaaactcattggctgcatggaggcgcgtgagactttgccgcaaatt
gaactggcttgtggcgaccacgtgactgcgatggtgttgcgccacatggagccgttgagc
gcgcatgacatggctgctttgcgcgactttgcggccaaacacaacgtgcaatggtggttg
caatccaaaggcccagacacggtgtgtttgatggaaggtgccttgggcgagccactgtct
tacgccttgcctgaatttggcatcaccatgcctttcaagcccaccgatttcacacaagtc
aatccgcacatcaaccgtgtgttggtcacgcgtgccttgcgtttgctcgatgtgcagccg
accgaacgtgtgattgactggttctgcggtttgggtaacttcaccttgcctttggccacg
ctcgcccgcgaagtcttgggcattgagggcagcgaggctttggtggcgcgctccggcgag
aactacctgttcaaccaagccaaccgcgacaagcctttggcgccaacaagctttgtggcg
cgtaacttgtttgagatgacgcccgagttgctgcgccaagatggtgccgcagacaagtgg
ttggtcgacccgccacgtgaaggtgctttctcgttggtgcaggccttggccgagatgcat
cagcagccagagctgcgtcagggctggacaccaccgaagcgcattgtgtatgtgagctgc
aacccagccaccttggcgcgtgacgcaggtgtattggtcaatgcagctggctatcgcatg
tcgtttgcgggtgcggtgaatatgttcccgcacacagcgcacgtcgagagcatggcggtg
tttgatttggtctaa
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