Limnohabitans sp. TEGF004: LTEGF4_10070
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Entry
LTEGF4_10070 CDS
T11140
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTEGF4_10070 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limt03019
]
LTEGF4_10070 (vacB)
03016 Transfer RNA biogenesis [BR:
limt03016
]
LTEGF4_10070 (vacB)
Enzymes [BR:
limt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LTEGF4_10070 (vacB)
Messenger RNA biogenesis [BR:
limt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LTEGF4_10070 (vacB)
Transfer RNA biogenesis [BR:
limt03016
]
Prokaryotic type
tRNA degradation factors
LTEGF4_10070 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BDU55326
LinkDB
All DBs
Position
1014115..1016235
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AA seq
706 aa
AA seq
DB search
MRAVLHRDRVKARVVRLDRKGRPEGRVVEILERSKQPIIGRLLQESGVWLVAPEDKRYGQ
DVLINKGATAKAMVGQVVVVELTEPPSLYGQPVGRIKEVLGEVDDPGMEIEIAVRKYGVP
HEFSDACLAMARSLPDKVRPQDKKDRVDLTDVPLVTIDGEDARDFDDAVYCEPAKVGKGK
GWRLLVAIADVSNYVETGSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVERL
CMVCDMLISASGDVEAYQFYPAVMFSHARFTYTEVAAILSNTRGPEAAKRKDRIDDLLNL
HDVYGALLKARHVRGAVDFETTETQIVCDESGRIDKIIPRVRNDAHKLIEEAMLAANVCS
ADFILQSKHPGLFRVHEGPTPEKIDVLRGYLKATGVGMTVGDKPKPSEFQAIADATKERP
DAQQIHSMLLRSMSQAVYTPDNNGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILTKRK
YTLPTLPTPGEAHAKLARRLASRVREPENKLVVKTKLTPDQQAWEAAGLHCSANERRADE
ASRDVEAWLKCKYMREHLGEEYGGVVTSATGFGLFVTLDAMYVEGLVHITELGGEYFRFD
EMRQELRGERTGIRYGIGSRVRIQVSRVDLDGRKIDFRLVREADELLPRHGKDAAGSPMQ
NFKTAVKKAFTKISGKDGRGESKSPSARVGKSTDKKAGAKSRRSRK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcggtgttacaccgtgaccgcgtcaaagcacgtgttgttcgcttagaccgcaaa
ggtcgcccagaggggcgcgtggttgaaattttggaacgctcaaagcaacccatcattggt
cgtttgctgcaagagagcggtgtgtggctggtggcgcctgaagacaagcgctacggccaa
gatgtgttgatcaacaaaggcgcgaccgccaaagcgatggtcggccaagttgtggtggtt
gaactgaccgagccgcccagtttgtatgggcagcctgtgggccgtatcaaagaggtgttg
ggcgaagtggatgaccccggcatggaaatcgaaattgctgtgcgtaagtacggcgtgccg
catgagttctcagacgcttgtttggccatggctcgaagcctgcccgataaggtgcgtccg
caagacaaaaaagaccgcgttgatttaaccgatgtgcccttggtcaccatcgatggtgaa
gatgcgcgcgactttgacgacgccgtgtattgcgaacctgccaaagtaggcaagggcaaa
ggctggcgcttgttggtggccattgctgacgtgagcaactatgtggaaaccggcagcgcg
attgatgtggatgcttatgaccgggccaccagcgtgtacttcccgcgccgtgtgattccg
atgttgcctgagaagctctccaacggtttgtgttcattgaaccccgatgttgaacgcttg
tgcatggtgtgcgacatgcttatcagcgcatcaggcgatgtagaggcttatcagttttac
cctgcggtgatgttcagccatgcacgcttcacgtacaccgaagtggcggctattttgtct
aacacgcgtggaccggaagcggctaaacgtaaagaccgtattgatgatttgctcaacctg
cacgatgtgtatggggctttgctcaaagctcgacatgtgcgtggtgcggtcgactttgaa
accaccgaaacacaaatcgtgtgtgacgaaagtggtcgtatcgacaaaatcattccgcgt
gtgcgcaacgatgcgcacaaactgattgaagaggccatgttggccgccaacgtctgcagc
gcggactttattttgcaaagcaagcaccccggtttgttccgtgtgcatgaggggccaacg
ccagagaagatcgatgtgctacgcggctacctcaaagccaccggcgtgggaatgacggtc
ggggacaagcccaagccttcagaatttcaagcgattgctgatgcgaccaaagagcgtcca
gacgcgcagcaaattcattcgatgctgttgcgttcgatgtcgcaagcggtgtacacgccc
gacaataacggccactttggtttggcgtttgaggcctatacccatttcaccagcccgatt
cgtcgctacccagatttgttggtgcatcgtgtcatcaaagcaattctgacgaagcgtaaa
tacaccttgccaacgctacccacgccaggtgaggcacatgccaaactggcgcgtcgattg
gcctcgcgcgtgcgcgagcctgaaaacaaattggttgttaaaaccaaactgacgcccgac
cagcaagcttgggaagctgctggtctgcattgcagcgccaatgagcgtcgcgccgatgaa
gccagccgcgatgtggaagcgtggctcaagtgcaaatacatgcgcgagcatttgggtgaa
gagtacggcggtgtcgtgacgtctgctacgggctttggtctgttcgtgaccttggacgcc
atgtatgtagaaggcttggtgcacatcaccgaactcggtggtgaatatttccgcttcgac
gaaatgcgtcaagagcttcgcggtgagcgcactggcattcgctacggtattggttcacgc
gtgcgcattcaggtgagccgcgtggacttagatggccgcaagattgatttccgcttggtg
cgtgaagccgatgagttgttgccacgccatggcaaagacgccgcaggctcgcccatgcag
aacttcaaaactgcggtgaaaaaagccttcaccaaaatcagtggcaaagatggacgtggt
gaatctaaatcgccgtctgctcgcgtaggtaaatccaccgataaaaaagccggcgccaaa
agccgacgctcgcgcaagtaa
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