Limnohabitans sp. TEGF004: LTEGF4_13710
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Entry
LTEGF4_13710 CDS
T11140
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt03030
DNA replication
limt03430
Mismatch repair
limt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LTEGF4_13710
03430 Mismatch repair
LTEGF4_13710
03440 Homologous recombination
LTEGF4_13710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limt03032
]
LTEGF4_13710
03400 DNA repair and recombination proteins [BR:
limt03400
]
LTEGF4_13710
Enzymes [BR:
limt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LTEGF4_13710
DNA replication proteins [BR:
limt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LTEGF4_13710
DNA repair and recombination proteins [BR:
limt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LTEGF4_13710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
DNA_pol3_tau_5
AAA
RuvB_N
AAA_22
AAA_16
AAA_14
AAA_30
AAA_18
Rad17
AAA_19
AAA_5
AAA_7
Adeno_E1B_55K_N
LacI
AAA_assoc_2
nSTAND3
TsaE
Herpes_Helicase
SKI
AAA_2
AAA_28
PIF1
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BDU55690
LinkDB
All DBs
Position
complement(1439668..1441533)
Genome browser
AA seq
621 aa
AA seq
DB search
MSYLVLARKYRPKTFTEMVGQEHVVQALTNALTTQRLHHAYLFTGTRGVGKTTVSRVLAK
SLNCQGLDGTGGITANPCGVCQACTDIDAGRFVDYTELDAASNRGVDEVQSLLEQAVYKP
VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL
RPMAPETVLEHLGHVLGQENIESEPQALRLLARAARGSMRDALSLTDQAIAYGGGQLQEV
AVRQMLGSADRSHVFRLIEALAHSDGKSVVETSEALRVHGLSAAATLEDMSMVLQRMAVL
QAVPDMGEGDAADPEAAEMARLAGVMPPDETQLLYSLSLHGRQELGLAPDEYAALTMVLL
RLLAFKPQAANSASASAEKKTLINPQRAASAPAPAAAPAASMQPAASQVPAPAPGPPEPQ
PAAPVQALPVRDMQPREVAPWEDDPSYDPDGSDSSSYDHDSDAAVVAMPVRQQAEPSAAL
EPQMPTTEVPQIVATPEGEFWHKLVMDMSAAETINALVRELGLQSQLVARDTDTWMLRVE
RESLNSTTSRERLQKALETAGYPVRLTVEVGRVQDSPAKRNAAAAAQRQAGAEAIILNDP
YVQSLMRDYGAKIVPGSIKPL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacctcgtgctcgcccgcaaatatcgccccaaaaccttcacggagatggtgggg
caagagcacgtcgtgcaggcgctcaccaatgcgctgaccacccagcgtttgcatcacgcg
tatttgttcaccggcacacgcggtgtgggtaaaaccaccgtgtcgcgcgtgttggccaaa
tcgctcaattgccaaggcttagacggcacaggtggtatcaccgccaacccctgcggtgtg
tgccaagcctgtaccgacattgatgctggccgctttgttgattacaccgagttggacgcg
gcttccaaccgtggcgtggacgaagtgcaaagcttgctggagcaagccgtttacaagcct
gtgcaaggccgcttcaaagtcttcatgattgacgaggtgcacatgctcaccaacaccgcg
tttaacgcgatgttgaagacgcttgaagagccgcctgaatatttgaaattcgtgctcgcc
acaaccgacccgcaaaaagtgccagtcaccgtgttgtcgcgctgcttgcaattcaacctg
cgccctatggctcccgagactgtgctggagcacttgggccatgtgttgggccaagagaac
attgaatctgagccccaagccttgcgtctgttggcccgtgctgcgcgtggctccatgcgc
gatgcgttgagtttgacggatcaagccattgcctacggtggcggtcagttgcaagaagta
gcggtgcgccaaatgttgggcagcgccgaccgctcgcatgtgttccgtttgattgaggcc
ttggcacatagcgacggtaaatcggtggtcgaaacttcagaagccttgcgcgtgcatggc
ctgagcgccgcagccacgctagaagacatgtcgatggttttgcaacgcatggctgtgttg
caagctgtgcctgacatgggtgagggcgatgccgcagaccccgaagccgccgagatggcg
cgtttggcgggtgtgatgccacccgacgaaacacagctgctgtacagcctgagtttgcat
ggccgacaagagttgggtttggcccctgacgaatacgctgcactgacgatggtgctcttg
cgattgttggcattcaagccacaagctgcaaactctgcttctgcttcggctgaaaaaaaa
actctaattaatccgcaacgtgccgcttcggcaccagcaccggctgctgccccagctgcg
tccatgcagcccgctgcatcgcaagtgcctgcgcctgcgcctggcccccccgagccccag
cccgcagcccccgtgcaggccttgcccgtgcgtgacatgcaaccacgcgaagtggctcct
tgggaagacgaccccagctacgaccccgacggttcagacagttccagctacgaccacgac
tcagacgctgctgtggtggccatgcccgtgcgccaacaagccgagcccagcgctgcgctt
gaaccgcaaatgcccaccaccgaagtgccgcagatcgtggccacacccgaaggtgagttt
tggcacaagttggtgatggacatgtctgccgccgaaaccatcaacgccttggtgcgtgag
ttgggtttgcagtcacaactggtggcacgtgacaccgacacttggatgctgcgcgtcgag
cgcgagtccctcaacagcaccaccagccgcgaacgtttgcaaaaagcactcgaaaccgcg
ggctaccccgtgcgcctgacagtggaagtgggccgcgtgcaagacagtcctgccaagcgc
aatgcggccgctgcagcgcaacgccaagcaggggccgaggccatcatcctcaacgacccg
tatgttcaaagtttgatgcgagactacggcgccaaaatcgtgccgggcagcatcaagccg
ctttaa
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