Limnohabitans sp. TEGF004: LTEGF4_18160
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Entry
LTEGF4_18160 CDS
T11140
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LTEGF4_18160 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
limt03019
]
LTEGF4_18160 (orn)
03009 Ribosome biogenesis [BR:
limt03009
]
LTEGF4_18160 (orn)
Messenger RNA biogenesis [BR:
limt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LTEGF4_18160 (orn)
Ribosome biogenesis [BR:
limt03009
]
Eukaryotic type
Pre-60S particles
RNases
LTEGF4_18160 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
pP_pnuc_1
Motif
Other DBs
NCBI-ProteinID:
BDU56135
LinkDB
All DBs
Position
complement(1905229..1905819)
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AA seq
196 aa
AA seq
DB search
MSEVATTPVTPVVPKLAKSDLNLVWLDCEMSGLDPERERLLEIAVIVTSPDLSVRIEGPV
FVIHQSDELLSKMDAWNKGTHGKSGLIDKVKASTVTEEQAQEQLIAFMKPYVSKGVSPMC
GNTIGQDRRFLNKYMPKLEGWFHYRNVDVSTLKELSRRWKPEVLNAFKKAQKHTALADVH
ESIDEMIHYREHFLKL
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagttgcaaccactcctgttacccctgtcgtccccaaactcgccaagtcagac
ctgaacttggtttggctcgattgcgaaatgtctggccttgaccccgagcgcgagcgcttg
cttgaaatcgcggtcatcgtgaccagccccgatttgtcggtgcgcattgaaggcccagtg
tttgtgattcaccaaagcgacgagttgctgagcaagatggacgcatggaacaaaggcaca
cacggcaagagcgggctgattgacaaagtcaaagcctccaccgtgaccgaagaacaagcg
caagagcaactcattgccttcatgaagccctatgtatccaaaggcgtgtcgcccatgtgt
ggcaataccattggtcaagatcgccgcttcttgaacaaatacatgcccaagctcgaaggc
tggtttcactaccgcaacgtggacgtgagtacgctcaaagagctgtctcgccgctggaag
ccagaggtgttgaatgcctttaaaaaggcccagaaacatacggcgctggccgatgtgcac
gagtcgattgacgagatgattcactaccgtgaacacttcttgaaactttaa
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