Limnohabitans sp. TEGF004: LTEGF4_18990
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Entry
LTEGF4_18990 CDS
T11140
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
limt Limnohabitans sp. TEGF004
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
limt03021
]
LTEGF4_18990 (rpoH)
Transcription machinery [BR:
limt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LTEGF4_18990 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_3
Motif
Other DBs
NCBI-ProteinID:
BDU56218
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All DBs
Position
1978205..1979128
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AA seq
307 aa
AA seq
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MTAITQQSHAITNPWGLVPSLGNLDAYITAANRLPMLTLEQEQEFARQLKDNNDLEAAGK
LVLSHLRLVVSVSRQYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMHWIKAE
IHEYILKNWRMVKVATTKAQRKLFFNLRSMKQGFKSDALDNTHRNTLNPHEVNAVATKLN
VKPEEVLEMEMRMSGGDVLLDPSPNEDSDEAFGPIAYLTDTNHEPTAMMAAHQRDVLASD
GIAAALNVLDERSRRIVEERWLKVQDNGSGGMTLHDLAAEYGVSAERIRQIEVAAMKKMK
AALAEYA
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaatcacccaacagtcacacgccatcaccaacccttggggtttggtgccgtcg
ctgggcaaccttgatgcctacatcacagctgccaaccgcttgcccatgctcacgcttgag
caagagcaagagtttgcccgtcaactcaaagacaacaacgacctcgaagccgctggaaag
ctggtgctctcgcacctgcgtttggtggtctcggtgtcacgccaatacttgggttacggc
ctgccccacgcagacctaatccaagaaggcaacatcggtttgatgaaagccgtcaaacgc
ttcgaccctgaccaaggcgtacgtttggtgagctacgccatgcactggatcaaggccgag
attcatgaatacatcttgaaaaactggcgcatggtcaaagtggccaccaccaaagcacag
cgcaaattgtttttcaacctgcgctcgatgaagcaaggcttcaagtctgatgcgctcgac
aacactcaccgcaacacgctcaacccacacgaggtgaatgcggtggcgaccaagctcaat
gtcaagccagaagaagtgcttgagatggaaatgcgcatgtccggcggcgatgtgttgctc
gaccctagccccaacgaagacagcgacgaagcctttggccccatcgcctacttgaccgac
accaaccacgagcccaccgccatgatggcggcgcaccagcgcgatgtattggcatctgac
ggcatcgccgctgcgctgaacgtgctcgatgagcgcagccgccgcatcgtggaagagcgt
tggctcaaagtacaagacaacggctcgggtggcatgacgctgcacgacttggccgctgaa
tacggtgtgagcgctgagcgcattcgccaaatcgaagtcgctgccatgaagaagatgaaa
gctgctttggctgaatacgcgtaa
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