Limnohabitans sp. TEGF004: LTEGF4_19850
Help
Entry
LTEGF4_19850 CDS
T11140
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
limt Limnohabitans sp. TEGF004
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
limt03400
]
LTEGF4_19850
Enzymes [BR:
limt01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
LTEGF4_19850
DNA repair and recombination proteins [BR:
limt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
LTEGF4_19850
Prokaryotic type
LTEGF4_19850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
BDU56304
LinkDB
All DBs
Position
2055679..2057166
Genome browser
AA seq
495 aa
AA seq
DB search
MPKLSPHSPHVDKGLMWFRRDLRAFDNAALFHALKSCKQVHCVFVFDKAILDSLPRADRR
VEFIRESLVALDAELHAVAGQAGAGLIVRHAVAADEVPRLAHELGVQEVFANHDDEPDAL
TRDAQVRGGLANFGIGFQTFKDHVIFERSEVLTQMGKPYGVFTPYKNAWLQKVNDFYLKS
YPVGKYIKALAARPKAYQVPVPSLADIGFEATNLSSLHVPTGSPGGLALFEDFFDRMDKY
DETRNFPAIKGPSYLGVHLRFGTVSIRQLASTAYKRMLVGSTGAEIWLSELVWRDFYHQI
LHHHPRVVKGAFKPEYNDIKWDHHKHAKELFAAWCEGRTGYPLVDAAMAQINQTGYMHNR
LRMVVASFLTKDLGIDWRWGERYFAEHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPT
NQSEKFDPEGKFIRRYVPALAKLNNKAIHAPWLAKPLELEEAGLVLGRDYPRPIVDHAEA
RAHTLERYAVVKKVK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagctctcgcctcattcacctcacgtcgacaaaggtctgatgtggtttcgacgc
gacctgcgcgcctttgacaacgcagcgctgtttcacgcgctcaaaagctgcaagcaagtg
cattgcgtgttcgtgtttgacaaggctattttggacagcctgccccgcgcagaccgccgc
gtggagttcatccgcgagtcactggtggcgctggacgccgagctgcacgccgtggcaggc
caagccggtgcgggcctgatcgtgcgccacgccgtagcggctgacgaagtgccacgcctc
gcccacgaactgggcgtgcaagaggtgtttgccaaccacgacgacgagccagatgcattg
acccgcgatgcccaagtgcgtggcggcttagccaactttggtattggttttcaaaccttc
aaagaccatgtgatttttgagcgcagcgaggtgctgacccaaatgggcaagccctacggc
gtgttcacgccctacaaaaacgcatggctgcaaaaggtgaacgacttttatttgaagtcc
taccccgtgggcaaatacatcaaagccttggcagcgcggcccaaggcctaccaagtgccc
gtgcctagcttggccgacattggctttgaagccaccaacctcagcagcctccacgtgccc
accggcagtcccggcggcttggccctgtttgaagatttctttgaccgcatggacaagtac
gacgaaacccgtaacttccccgccatcaaaggccccagctacttgggcgtgcatttgcgc
tttggcacggtgtcgattcgccaactggcatccaccgcctacaagcgcatgttggtgggc
tcaaccggtgcagaaatttggctgtcggagctggtgtggcgcgatttttatcaccaaatc
ttgcaccaccacccgcgtgtggtgaagggcgccttcaagcccgaatacaacgacatcaaa
tgggaccaccacaaacatgccaaagagctgtttgccgcctggtgcgaaggccgcacaggc
tacccgctggtggacgcagcgatggcgcaaatcaaccaaaccggctacatgcacaaccgc
ctgcgcatggtggtggccagcttcttaaccaaagaccttggcattgattggcgctggggc
gagcgctactttgccgagcacctgaatgactttgacctcgctgccaacaacggcggctgg
cagtgggccagctccagcggctgcgatgcacagccctacttccgcatcttcaaccccacc
aaccaaagcgaaaagtttgaccccgaaggtaagttcattcgccgctatgtgcccgcgctg
gcgaagctcaacaacaaagccatccacgcgccgtggttggccaaacctttggaattagaa
gaagcggggttggtgctggggcgcgattacccaaggcccatcgtcgatcacgccgaggcg
cgtgcgcacacgctggagcggtatgcagtcgtgaaaaaggtgaaataa
DBGET
integrated database retrieval system
