Limnohabitans sp. TEGF004: LTEGF4_23010
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Entry
LTEGF4_23010 CDS
T11140
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt03030
DNA replication
limt03430
Mismatch repair
limt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LTEGF4_23010
03430 Mismatch repair
LTEGF4_23010
03440 Homologous recombination
LTEGF4_23010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limt03032
]
LTEGF4_23010
03400 DNA repair and recombination proteins [BR:
limt03400
]
LTEGF4_23010
Enzymes [BR:
limt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LTEGF4_23010
DNA replication proteins [BR:
limt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LTEGF4_23010
DNA repair and recombination proteins [BR:
limt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LTEGF4_23010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
BDU56620
LinkDB
All DBs
Position
complement(2358142..2358798)
Genome browser
AA seq
218 aa
AA seq
DB search
MISFLSPLQWWRSLKREWLIYHLGLPEFRFMFDAPPPNEWVSLDCETTGLNVSSDEIISI
GAVRIVGNKIMTSERFEVLVRPERGVSADSVRIHRLRGQDVAQGLPADEAMKQLMRFIGS
RPLVGYFLEFDVAMLNRAIWPLLGQGLPQHKIEVSAMYYDHKFRQMLPYEQQTNPNIDLR
FATLMSDLDLPVREAHDALNDAVMAAMAFIKLRQLRGG
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgtttctttctcctttgcagtggtggcgctcactcaagcgcgagtggttgatt
tatcacctcggtttgcctgagtttcgtttcatgtttgacgccccaccgcccaatgagtgg
gtgtcgttggactgcgaaaccacgggcttgaacgtcagctcggatgaaattatttcgatt
ggcgcggtgcgcatcgtgggcaacaaaatcatgaccagcgaacgctttgaagtgttggtg
cgtcccgagcgcggcgtatctgctgacagcgtgcgcattcatcgtttgcgaggccaagat
gtggcccaaggtttgcccgcagatgaagccatgaagcagctcatgcgctttattggtagc
cgtcctttggtgggctactttttagagtttgatgtggccatgctcaaccgagccatttgg
ccgctcttgggtcagggcttgccacagcacaagatcgaagtctcggcgatgtactacgac
cacaagtttcgccagatgctgccttatgagcagcagaccaaccccaacatcgatttgcgg
tttgctacgttgatgtcggatttggatttgcctgtgcgtgaggcgcacgatgctttgaat
gacgctgtgatggctgccatggcgttcattaagttgcgtcaactgcggggcggttga
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