Limnohabitans sp. TEGF004: LTEGF4_23760
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Entry
LTEGF4_23760 CDS
T11140
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
limt Limnohabitans sp. TEGF004
Pathway
limt02020
Two-component system
limt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
limt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LTEGF4_23760 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LTEGF4_23760 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
limt03021
]
LTEGF4_23760 (rpoN)
Transcription machinery [BR:
limt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LTEGF4_23760 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_5
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BDU56695
LinkDB
All DBs
Position
complement(2453075..2454646)
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AA seq
523 aa
AA seq
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MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEIEQMLDENPFLDKEFEEAPREEFG
LDKADTPSRDEEVEPMREVPSMDGGMSEISVDNTASDTEPSVDGIAESWDGDGSVEFSAD
DSEWGGDAPASNNNNTADSDTADATELARMQESLTSHLHRQALSLRLSPTDTAALRYLIE
NLNDDGYLEDTLRSLAEGLGGDDEEQIEELEHRFQVALSLLQSLEPVGVGARDLAECLTL
QLKALTPKGEEALQIRDTAILMCKQPMEMLAKRDFKRLAVIVGDSEANVKVAIALIGRLE
PKPGRRFADVERHVVVPDVLVTRVGKSTIAPKFKVALNPDVMPRLRVHDIYANALKGGKG
DNHAGLQQRLQEARWFIKNIQQRFDTILRVSNAIAERQKNFFIHGELAMRPMVLREIAEE
LGLHESTISRVTTNKYMSTPFGTFELKYFFGSGLETDSGNNASSTAVRALIKQFVASENP
KKPLSDNQLSEMLKEQGIECARRTVAKYREALRIAPTTLRKAL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggcttatcactccgtgtctcccaacatctggcgctcacgccccagttgcag
cagtcgatccgactgttgcagttgtcgacgttggagctgagccaagagattgagcaaatg
ctcgacgagaacccgtttctcgacaaagagtttgaagaagccccgcgcgaagagtttggc
ctcgacaaagccgatacaccgagccgcgacgaagaggttgagcccatgcgcgaagtgccg
tcgatggacggcggcatgtctgaaatcagcgtagataacacggccagcgataccgaaccc
agcgtggacggcattgctgaaagttgggatggcgatggcagtgtggagttttctgccgac
gattccgagtggggcggcgatgcccctgccagcaataacaacaacaccgctgacagtgac
actgccgatgccactgagctggcgcgcatgcaagagtcgctcacctcgcatttgcaccgc
caagcgctgtcgctgcgcctcagccccaccgatacggccgcgctgcgctacttgattgaa
aacctcaacgacgatggttatcttgaagacaccttgcgcagcttggccgaaggtttgggc
ggggacgacgaagagcaaatcgaagagctggagcatcgcttccaagtggctctgtctctg
ttgcaaagcctcgagcccgtaggtgtgggcgcacgcgatttggccgagtgcttgacgctg
caactcaaagcgctgacgcccaaaggcgaagaagcattgcagattcgcgacacggcaatt
cttatgtgtaagcagccgatggagatgttggccaagcgcgatttcaaacgcctcgccgtc
atcgtcggtgacagcgaagccaacgtcaaagtagcgattgccctgatcggtcgcttagag
cccaagccaggccgccgctttgctgatgtagagcgccatgtggtggtgcctgatgtgttg
gtgacccgcgtgggcaaatccaccatcgcgcctaaattcaaggtcgcgcttaaccccgat
gtgatgccccgtttgcgcgtgcacgacatttatgccaacgccctcaaaggcggcaagggc
gacaaccatgcgggcttgcaacaacgcttgcaagaggcgcgttggttcatcaaaaacatt
cagcaacgctttgacaccatcttgcgcgtgagcaacgccattgctgagcgccagaaaaac
ttcttcatccacggtgaacttgccatgcgcccgatggtgctgcgcgaaattgccgaagag
ttggggttgcacgaatccaccatcagccgcgtgaccaccaacaaatacatgagcacgccc
tttggcacgtttgagctcaagtatttctttggctcggggctagagaccgacagcggcaac
aacgcatccagcacagcggtgcgcgcgctcatcaagcaatttgtggcgagcgagaacccc
aaaaagccgctatcggataatcaactctccgaaatgctcaaagagcaaggcattgagtgc
gcacgccgcaccgtggccaaataccgtgaggcgctgcgtattgcgcccacgacactgcgc
aaagcgctttaa
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