Listeria innocua (serotype 6a): lin0195
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Entry
lin0195 CDS
T00067
Name
(GenBank) similar to ATP dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lin
Listeria innocua (serotype 6a)
Pathway
lin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
lin0195
09124 Replication and repair
03420 Nucleotide excision repair
lin0195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lin03021
]
lin0195
03036 Chromosome and associated proteins [BR:
lin03036
]
lin0195
03400 DNA repair and recombination proteins [BR:
lin03400
]
lin0195
Enzymes [BR:
lin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
lin0195
Transcription machinery [BR:
lin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
lin0195
Chromosome and associated proteins [BR:
lin03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
lin0195
DNA repair and recombination proteins [BR:
lin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
lin0195
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
DUF3470
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAC95428
Pasteur:
LIN00195
UniProt:
Q92FB1
LinkDB
All DBs
Position
184384..186723
Genome browser
AA seq
779 aa
AA seq
DB search
MKNVQISVRRLVEFVLKSGSIDSRMTSSDRALEGTKIHQLLQKEAGEGYEAEVSLKLVRV
IDDISFTLEGRADGVINGEMIDEIKTTEVEMDEITEDFRPLHWAQLICYGFMLAEKSDLA
EVTLQLTYYQVADKEVKQFTRVMSRKEMSTFVDDLLSKYAIWAKMSAAWEMKRNKSIQEL
TFPYDSYRRGQRELAIAVYRTVMDDEKLFCEAPTGIGKTMSTLFPSVKAMGEGKADKLFY
FTAKTITRQVAEDALDEMRRKGLGARSVTITAKDKICFLDERKCDPEHCQFARGYYDRLN
EALFDMLQTEETITRSVVEAFARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRF
FADGPGRYTFLVDEVHNLVDRARSMFSATLSKSIIMQVKRELDKKTDKKLLNSVTAMNKI
MIALNKQLAEENKTIYVKKEALSDWNEAVLKFSYVAKDWLPKNTEAKAQADVLELYFESL
RYLKIAELYDKRYVTQITRNRSDVLIKQLCLDPAFLLSEKLKLGASSVLFSATLRPIDYY
TNLLGGNNDTSRLTFASPFKQNNMHLMVADYISTKYQRRENSLESVIDALYAMLSGKKGN
YLFFFPSFQYLETAFELFSEKYPEVRAQKQQSFMNEAEREEFLAAFETGREETFVGFCVL
GGVFSEGVDLRGERLIGTAIVGVGLAQMNVESDLIKDYYNETIGRGFDYAYQIPGMNKVL
QAVGRVIRGEKDQGVVLLIEERFATERYKALFPAHWNHARTVKNTLQIEREVNEFWRNN
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgtacagatctcagtgaggcgcttagtagaatttgtcttaaaaagcggcagt
attgatagccgaatgactagttcagatcgcgctttggaagggacgaaaattcatcaatta
ctccaaaaagaagcaggagaaggatacgaagccgaggtatcattaaagcttgtacgagta
atagatgacatttcttttacacttgaaggccgagcggatggcgtcataaacggagaaatg
atagatgagattaaaactaccgaggtagaaatggatgaaattactgaagactttcgcccg
ctgcactgggcccagctcatttgttatggattcatgttagcggagaagtctgatttagca
gaagtcacgcttcaattaacgtactatcaagtagccgataaagaagtgaaacaattcact
cgagtcatgagtcgtaaggaaatgagtacttttgtggacgatttgctttcaaaatatgct
atttgggcaaaaatgtctgcagcttgggaaatgaagcgaaataaatctattcaagaatta
actttcccatatgacagctatagacgtggtcaaagagagctagcaattgccgtttatcgg
acagtgatggatgatgaaaagctattttgtgaagcgcctacaggcattggaaaaacaatg
tcgacgctatttcccagtgtaaaagcaatgggcgaggggaaggcagacaagcttttttat
tttacagcaaaaacaattacgagacaggttgccgaagatgctttagatgaaatgcgccgt
aaaggactaggggcaagaagtgttacaatcacagcaaaagataaaatatgctttttagat
gaacgaaaatgtgacccggagcactgccaatttgcgcgtggctattacgatcgcttgaat
gaagcgttgttcgatatgctgcaaacagaagaaactataactcgatcggtcgtcgaagca
tttgcccggaaatatactttatgtccgtttgagttatcgcttgatgtggcgcttttttgt
gatgtaattgtgtgtgattataactatttatttgacccagtcgtttatttgaaacgtttt
tttgcggatggacctggcagatatacttttctagtggatgaagtgcataatttagtagac
cgagctcgttcgatgttctcggcgacattaagtaaatcaatcatcatgcaagtaaaacgt
gaattagacaaaaaaaccgataaaaaactactaaattcagtaacggcaatgaataaaata
atgattgccctaaataagcaactagccgaagaaaataaaacgatctatgttaaaaaagaa
gccttgtccgattggaatgaagctgttttaaaatttagttatgtagcaaaagactggttg
ccaaaaaatacagaggcaaaagctcaagcagatgtactggagctttattttgaaagttta
aggtatttaaagattgctgagttatacgataagcgctatgtcactcaaattacgcggaat
cggtccgatgtgctgataaaacaactatgcttagatccggcgtttttactatcagagaaa
ttgaaattaggtgctagttcagtacttttttcggcgacgcttagaccgattgattactac
acgaatttacttggtggaaataatgatacaagtcgtcttacttttgcgtctccgtttaaa
cagaataatatgcatttaatggtagcggattatattagtacaaagtatcaaaggcgtgaa
aatagcttggaatcagtgattgatgcgctttatgcgatgctttccgggaaaaaaggcaat
tatttgtttttctttccatcattccaatatttagaaacggcatttgaattgtttagcgaa
aaatatcccgaagtgcgagcgcaaaaacaacaatcttttatgaacgaagcagagcgcgag
gaatttctagcagcttttgaaacggggcgtgaagaaacgttcgtcggtttttgtgtctta
ggaggcgttttttctgaaggcgttgatcttcgaggggaacgcttaattggaacggcaatc
gtaggcgtgggacttgcgcaaatgaacgttgaatctgatttaattaaagattattataat
gaaacaatcgggcgcggatttgattatgcgtatcagattcccggtatgaacaaagtcctt
caagcggtaggacgtgttattcgcggcgaaaaagatcaaggcgttgtcttactgatagaa
gaacgttttgcaacagaacggtataaagctttgtttccggctcattggaaccatgccagg
acagtgaaaaatacgctgcaaatcgagcgagaagtaaacgaattttggcggaacaactga
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