Listeria innocua (serotype 6a): lin0859
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Entry
lin0859 CDS
T00067
Name
(GenBank) similar to ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lin
Listeria innocua (serotype 6a)
Pathway
lin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lin0859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lin03019
]
lin0859
03009 Ribosome biogenesis [BR:
lin03009
]
lin0859
Enzymes [BR:
lin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
lin0859
Messenger RNA biogenesis [BR:
lin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lin0859
Ribosome biogenesis [BR:
lin03009
]
Prokaryotic type
rRNA helicases
lin0859
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
CMS1
NABP
Motif
Other DBs
NCBI-ProteinID:
CAC96091
Pasteur:
LIN00859
UniProt:
Q92DF4
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All DBs
Position
894912..896462
Genome browser
AA seq
516 aa
AA seq
DB search
MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM
IHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN
PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL
FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAP
ELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTK
KRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLK
MLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGKGR
RSGGGSGSGGGGNRDRRGGGEQRSGGNKGNYSQKSK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaatcggatg
gggtttgaagaagcaacgccaatccaagaaaaaacaattccactaggactagcaggtaaa
gacttaatcggacaagcacaaacaggtactggtaaaacagccgcttttggtcttccaatg
atccacaaaatcgaccaaaagagcaacaacgtacaagctttaattattgctccaacgcgt
gaacttgcaatccaagtttcagaagagctttataaacttagctatgacaaacatgtacgt
gtgctagcggtttacggtggtagtgatattagccgtcaaatccgttcacttaagaaaaac
ccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgcacactc
aaactagaccacgtggaaacacttgtactagatgaagcagacgaaatgctaaacatgggc
ttcattgatgatattgaaactatcttaaaagaagtaccagcagaacgtcaaacattacta
ttttctgcaacaatgcctgatccgattcgccgtattggtgaacgtttcatgcacagccca
gaacttattcgtattaaagcgaaagaaatgactgcactattaatcgaacaattcttcgta
aaagtgcacgaaaaagaaaaatttgacgtattatctcgtttattagacgttcaagcacca
gaactagcaattgtttttggtcgtacgaaacgtcgtgtagacgaactatctcgcgcgctt
gatatgcgtggttacgtggctgaaggtatccacggtgacttaacgcaagcaaaacgtatg
agcgtactacgcaaatttaaagaaggaaaaattgatgttctagttgcaacagacgtagca
gcacgtggacttgatatttccggcgtaacacatgtatataactatgatattccacaagat
ccagaaagctatgttcaccgtatcggtcgtactggtcgtgctggtaaagaaggtatggcg
attactttcgtacaacctcgtgaaatgggttatctacgtattgttgaagaaactacgaaa
aaacgtatgcaaccacttcaagctcctacttgggacgaagcatttgcaggccaattacgc
gtagcaactgaaaaaattcaagaagcaattacagaagaaaacttagctgactataaaacg
tttgctaacgaacttcttgaaaaatacgatgcaactgacatcgcagcagcaatgcttaaa
atgttagcgaaagagccagacaaaactcctgtccatattactgaagagcgtccattacca
tcccgtggtggcggtggctacaaaggtaaaaatggtaaaggcggtaaaggtggcggctat
cgcggcggaagcggtaaaggcggaagctaccgcgatcgtaacaacagcggcaaaggtcgt
cgtagcggcggcggaagcggttctggcggtggcggaaatcgtgatcgtcgtggtggcgga
gaacaacgcagcggcggcaacaaaggcaactactcacaaaaatctaaataa
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