Listeria innocua (serotype 6a): lin1488
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Entry
lin1488 CDS
T00067
Name
(GenBank) similar to ATP-dependent RNA helicase, DEAD-box family (deaD)
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lin
Listeria innocua (serotype 6a)
Brite
KEGG Orthology (KO) [BR:
lin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lin03019
]
lin1488
03009 Ribosome biogenesis [BR:
lin03009
]
lin1488
Enzymes [BR:
lin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
lin1488
Messenger RNA biogenesis [BR:
lin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lin1488
Ribosome biogenesis [BR:
lin03009
]
Prokaryotic type
rRNA helicases
lin1488
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Microtub_bd
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAC96719
Pasteur:
LIN01488
UniProt:
Q92BQ9
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All DBs
Position
complement(1489127..1490434)
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AA seq
435 aa
AA seq
DB search
MTKKSRFDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFI
LPIINNVNPEKDAVQAVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAID
KLKKQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPAN
LQMLVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVL
VGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVV
ATDLAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPSDEDRLNQL
EKMGIEFKHVDWKNKEFVTLEDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYKKKIN
YKMNEIKRRERRKKR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaaatcaaggtttgaccaatttggctttcaaccttttattggacttgcaata
gataaattaggattctatgagccaacagaagtacaacaaaagctaatcccaggcatttta
aaaggtgaaagtatcattggccaatctcaaactggtacagggaaaacccatacttttatt
ttgccaattattaacaatgtgaatcctgaaaaagatgcagtacaagcggttattacggca
ccaagtcgcgagcttgctactcaaatttataatgaaattcgcaaagtaacgaaatttagt
gaaaaagaaatcgctgttcaactcgttattggtggtacggataaacaacgtgcaattgat
aaactgaaaaaacaaccacaaattattgttggaacaccaggtcgtattaatgacttaatt
cgcgaacaagccttatttgttcatactgctaaaacattagttattgacgaagcagatatg
acacttgatatgggcttcttaaacgatgtcgaccatattgctggaaaaatgcctgctaat
ttacaaatgcttgttttttccgcgacaattccgcaaaaattaaaaccatttttaagcaaa
tatatggaaaatccacgttatgagcacattcaaccaaaagttgctgcttcaaaaacagtg
gaacatcgtattatggcaactcgtagccgtaataaacttgatttacttaaaaatgtttta
gttggttcacagccttatttagcgattgtttttactaatacaaaaacaactgctgatgaa
gtagcgaacggtttaatcgaacgtgggctaaaagtagcgaaaatccacggcgatgtaaat
cctcgtgaacgtaaacggacgatgaaacaaatcgaaaacttagattatcaatatgttgtt
gcgacagatttagctgctcgtggtattgatattcaaggaattagtcatgttgtaaactat
gaattaccagatgatctcgatttttatattcaccgtactggtcggactggacgtgcagga
cattcaggtattgcacttactttatttgaaccgtcagatgaagatcgcctaaatcaactt
gaaaaaatgggtatcgagtttaaacatgttgattggaaaaataaagaattcgttacacta
gaagaccgcaatcgccgtgcaaaacgtgaagctaaacgcgaaacagctgatccgcgcgaa
atcggtatgcgtaaaaaagcaaaacaaaaaggtaagccaaattataaaaagaaaattaat
tataaaatgaacgaaatcaaacgtcgtgaaagacggaaaaaacgataa
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