Listeria innocua (serotype 6a): mfd
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Entry
mfd CDS
T00067
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lin
Listeria innocua (serotype 6a)
Pathway
lin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
mfd
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lin03400
]
mfd
Enzymes [BR:
lin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
mfd
DNA repair and recombination proteins [BR:
lin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
mfd
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
DUF267
Motif
Other DBs
NCBI-ProteinID:
CAC95479
Pasteur:
LIN00246
UniProt:
Q92F61
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All DBs
Position
240860..244399
Genome browser
AA seq
1179 aa
AA seq
DB search
MKGLQQLIYEQKDIRAVLNALDEKEKSQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLIDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV
PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIV
TRLEKKMTLTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
LPKNTAILLDEFARILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLDENHSPK
IYLTLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTEIESWHKNNYAVVILAPNLERA
EKMQQTLADYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKI
KKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSADDEMQREFEEAFPYQETDDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHYETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKNGTVDIVVGTHRLLSKDVEYQDLGLLVVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIESLLDLEDLQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGIESVEQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGT
QLKITINVQNKPLKEWLYQVKSLAEKLRGAMKEQVSTEK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaaaagatattcgcgcggtcttaaacgcg
cttgatgaaaaagaaaaatcacaacttgtcacagggctgacaggttcttcgcgcgcgctt
tttgcgagtgtggtggaaggcgcatcaaagcgaccagttgtgtttgtaacgcataatttg
taccatgcgcaaaaattatacgacgatttactttctttaatagatgtggatagattgttt
ttatatccagcagatgaattaatttcttcagagttaagtatttctagtccagaattgcgt
ggtcaacgtgttgaggcgctcgacttcttattatctggcaaaccaggaattgtaattgtt
ccagttgcagggcttagaaaaatgcttccacctgtctcgttatggaaacattttaatata
tctatcgttgaaggcgaagaaatcgatccagatgtattgcgccaaaaattagtcactatg
ggttacacgatgagtggaatggtgaacaccccaggagaattcagtgtccgcgggggcatc
attgatatttatccgattacagaagaatttccgattagaatagaacttttcgataccgaa
gtggattctcttcgtttctttgatgtggagacacagcgttcgacaacacgtgttgaagaa
ttccgtttgcttcccgcgacagaaatcatcttagatcaaagctattatcctgacattgtt
acccgtttagaaaagaaaatgacgcttacgttaaatgaactaaaagaaaacgaagataaa
caagcactcgttgaaaatttagaagaagatttagaaatgttgcgttctggcgtaaaacca
gacatgttctttaaatatattggtttagcttatccagatccagcttcacttttcgattat
ttgccaaaaaacactgctatattactcgatgaatttgcgcggattttagaaaccgaagaa
agtttggagcgggaagaagctgagtggcagaccgaaacattaagtcgcatggaaacagtt
cgcgacgttcaagtaagccattcattcaaaaaattattagatgaaaaccattcgcccaaa
atatacttaacgcttttccaaaaacaaatggcaagtatgcgcgtgtcaaaaacgaccaat
atcgtttataaacaaatgcagcaatttcatggccaaatgaatgttttaaaaacagaaata
gaaagttggcataaaaataattatgccgtagttattttagcgccgaacttagaacgtgcc
gaaaaaatgcaacaaactttagcggattacgatatggaaagcacgattttgaaaaaagaa
tcggatgtaccaaaatatggtatggttcaatttgtcatcggaacgttccaaaacggtttt
gaacttccgcttgcaaaagtagccattattagtgaaactgaactttttaataaaaaaatc
aaaaaggtgaaaaaacgtcaaaaactttctaatgcagaacgaatacaaagttattctgaa
ttaaaagttggcgactatgtggttcacgttaatcatggtatcgcccgttatgtcgggatg
gaaacactagatattaacggcgtgcacaaagattatttgctgctagtttaccaaggtgag
gataaacttttcattccagtagatcaacttgatttagttcaaaaatatgttggtgcagaa
gggaaatccccaaggttaaacaaactaggtggtgctgaatggaagcgtgtgaagaagaaa
gtacaagcttccgtccaagatattgccgacgatttaatcaaattatatgccgaacgagaa
gctgaaaaaggttatgcatttagtgcggatgacgaaatgcagcgcgaatttgaagaagcc
tttccgtaccaagaaactgacgaccaattgcgctcgatttcagaaatcaaaaaagacatg
gaacgtccgcgcccaatggatcgacttttggtgggggatgttggttacgggaaaaccgaa
gtggctttaagagctgctttcaaagcaattatggatggcaagcaagttgcgttcttagtc
ccaacgactattttggcgcaacaacattatgaaacaatgaaagaaaggttccaaggtttc
ccaatcgaaatcggacttttaagccgtttccgtacgaaaaaacaacaaacagagacgtta
aaaggaatgaaaaatggcacagttgatattgtggtcggaacgcaccgcctattatcaaaa
gacgttgagtatcaagatttaggcttgcttgtagtcgacgaagaacaacgatttggcgta
actcacaaagaaaaaatcaaacaaatgcgatcaaaaatagatgtgctaactcttactgca
acaccaattccgagaacacttcacatgtctatgctcggcgttcgtgacttatctgttatc
gaaacgcctccagcgaaccgttttccagttcaaacatacgtagcagagcaaaataacgtt
ttagttcgcgaggcaattgaacgtgagttggcgcgggatggacaagtttattatctttac
aaccgtgttgaatcaattacgcaaaaagctgatgaaatttctgcaatggttccggatgca
cgtgttgcaacggctcatggtcaaatgggtgaatcggaattagaatcagttattttaagt
ttccttgaaggagaattcgatgtcctcgtcacgacaactattattgaaaccggagtagat
attccgaacgttaatacgcttttcgtgcaagatgctgatcgtatgggactatcacaactg
taccaattgcgcggacgggtaggacgctggaacagaatcgcatatgcttactttatgtat
caaaaagataaaattttgcgtgaggaagctgaaaaacgcttatcagccattaaagagttt
accgagttaggctctggatttaagattgcaatgcgcgacttatccattcgtggggctgga
aatatccttggagcgcaacaacacggctttattgattcggtcggcttcgatctatactcg
caaatgctaaaagaagcaattgaagcgaaaaaaccgaaagaagaacaaaaacaaatcgtt
ccagtcgaaatcgacattcaggcagatgcctatattccagaatattatattactgacggg
cgccaaaaaattgagatgtacaaacggttccgaaatattgaatcattactcgacctggaa
gacttgcaaagcgacatgattgaccgttttggtgagtatccagaagaagttgaatattta
tttacgatgacagaactcaaagtacatgcgcttgaagttggaattgaatcagttgaacaa
gaacaaaataaaattacgatgctattttcagaaagcggaacagctggaattcgcggagac
atcgtcatgcaaattattggcgaatttggtcgtatggttggagtaggcatggaaggaaca
cagctgaaaatcacaataaatgtccaaaataaacctttaaaagaatggctatatcaagtg
aaaagtttagcagaaaaacttcgtggagctatgaaagaacaagtatctaccgaaaagtag
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