Listeria ivanovii subsp. londoniensis WSLC 30151: JL53_01460
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Entry
JL53_01460 CDS
T03402
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lio
Listeria ivanovii subsp. londoniensis WSLC 30151
Pathway
lio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL53_01460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lio03400
]
JL53_01460
Enzymes [BR:
lio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL53_01460
DNA repair and recombination proteins [BR:
lio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JL53_01460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AIS61484
LinkDB
All DBs
Position
293005..296544
Genome browser
AA seq
1179 aa
AA seq
DB search
MKGLQQLIYEQKDIRAVLNALDGKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDSDRLFLYPADELISSELSISSPELRGQRVEALDFLISGKPGIVIV
PVAGLRKMLPPVSLWKHFNISIIEGEEIDPEVLRQKLLTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTSRVEEFRLLPATEIILDQNYYPDIV
KRLEKKMMFTLNELKEKEDKQVLVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
FPKNTAILLDEFARILETEENLEKEEAEWQTETLGRMETVRDVQVSHSFKKLLDENHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPSIERA
EKMQQTLADYDMESTILKKESDIPKYGLVQFVVGTFQNGFELPLAKVAIISESELFNKKV
KKVKKRQKLSNAERIQSYSELKVGDYVVHINHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSPDEEMQREFEDAFPYQETDDQLRSIAEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKSGTVDIVVGTHRLLSKDVEYHDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVETITQKADEISAMVPDARVAIAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIEVLNDLEELQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGVESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMIGVGMEGA
QLKITVNIQNIPLKEWLYQIKSLAEKLRGALKEKVSSEN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaaaagatattcgagcggtcttaaatgcg
ctcgatggaaaagaaaaagcgcaacttgttactgggcttactgggtcttcgcgtgcgttg
tttgcaagcgtagtggaaggtgcgtctaagcgaccagttgtttttgtgacgcacaattta
tatcatgcgcaaaagctatatgatgatttattatctttgatggattcggaccgtctgttt
ttatatccggctgatgaactaatatcttctgagttaagtatttccagtccggaactcaga
ggtcagcgagtcgaagcattagattttctaatttctggaaaacctgggatagtgattgtt
ccggttgcggggctcagaaaaatgctcccgccagtatctctttggaaacactttaatata
tctattatagaaggcgaagaaattgatccagaagttttgcgccaaaaattgcttaccatg
ggctatacgatgagtggaatggttaatacgccaggagaatttagcgttcgtggtgggatt
atagatatttacccaattacggaagaatttccaattagaatagaactatttgataccgaa
gtggattcgcttcgtttctttgatgtcgaaacacagcgttctacttctcgtgtagaagag
ttccgtttactaccagcgacagaaatcattttagatcaaaactattacccagatattgtc
aaacgtcttgagaaaaaaatgatgtttactttgaatgaattaaaagaaaaagaagataaa
caagtacttgttgaaaatttagaagaagatttagaaatgttgcgttcaggtgtaaagcca
gatatgtttttcaaatacatagggttagcctatccagatccagcatcactttttgactat
tttccaaaaaatactgccattttattagatgaatttgcgcgtatattagaaaccgaagaa
aacttggaaaaagaagaagcagaatggcagacggagacattaggtcgtatggaaacggta
cgtgacgttcaggtgagccattcttttaaaaaattactcgacgaaaatcactcgccaaaa
atatatttatctctttttcaaaaacaaatggcgagcatgcgggtatcgaaaacaacgaat
atcgtctacaaacagatgcaacaattccatggtcaaatgaatgtactcaaaacagaacta
gaaagctggcataaaaacaattatgcggtagtcatcctagcgccaagtatagaacgtgca
gagaaaatgcaacaaacattagcagattatgatatggaaagcacaattctgaaaaaagag
tctgacatccccaaatatgggctggttcaatttgtcgttggaacatttcaaaatggcttt
gagttaccacttgccaaagtagcgattattagcgaatctgaactttttaataaaaaagta
aaaaaagtgaaaaagcgccaaaaactatctaatgctgagcggattcaaagctattccgaa
ttaaaagtgggcgattatgtcgtgcatataaaccacggcattgctcgctacgttggaatg
gaaactttagacattaatggcgtgcataaagattatcttcttctcgtttatcaaggtgaa
gataaattgtttatcccagtggaccaacttgacttagtgcaaaaatatgttggtgctgaa
gggaaatctccaagactaaataaacttggtggcgcggaatggaaacgcgtgaagaaaaaa
gtgcaagcttccgtccaggatattgcagacgatttaatcaagctatacgcggaacgagaa
gcggaaaaaggttatgcattcagcccagatgaagaaatgcaacgcgaatttgaagatgct
ttcccgtaccaagaaaccgacgaccaattgcgctccattgcagaaattaagaaagatatg
gagcgaccacgcccaatggatcgtttgcttgttggtgatgttggctacggtaaaacagaa
gtggcgcttcgggctgcttttaaagcaattatggatggtaaacaagtagctttcttagtt
ccaacaactatcctggctcaacagcattttgaaacaatgaaagagcgattccaaggtttt
ccaattgaaattggccttttaagtcgtttccggacaaaaaaacaacaaacagaaacatta
aaaggaatgaaaagtgggacagtagatatagttgtcggcacacaccgactattatcaaaa
gatgttgagtaccatgatttaggtttgcttattgtcgacgaagaacaaagatttggtgta
actcataaagaaaaaattaaacaaatgcgttcaaaaatagatgtattaacactaacagcg
actccaattccacgaacactacacatgtcgatgctaggtgttcgtgatttatccgttatc
gaaaccccgccagcgaatcgctttccagttcaaacatacgtagcggaacaaaataatgtt
cttgttagagaagcgattgaacgggaactcgcgcgcgatggacaagtctactatctttac
aatcgggtagagacaattacacaaaaggcggatgaaatttctgcaatggttcccgatgcc
cgtgttgccatcgcgcatggacaaatgggtgagtctgaattagagtcggttattttaagc
ttccttgaaggtgagtttgatgttctggtaaccaccactattatcgaaacaggcgtggat
attccaaatgtaaatacactcttcgttcaagatgctgatcgaatgggcctatcacaactg
tatcaattgcgcggaagggtagggcgctggaatagaattgcttatgcttactttatgtac
caaaaagataaaattcttcgtgaagaagcggagaaacgcttgtcagccattaaagaattt
accgaattaggctctggtttcaaaattgcgatgcgcgatttatctatccgtggcgctggt
aatatcctcggtgcgcaacaacatggctttattgattctgtcggttttgacctttattcg
caaatgctaaaagaagcaatcgaagcgaaaaagccaaaagaagaacaaaaacaaattgta
cccgtcgaaatcgatatccaagcagatgcctatataccagaatattacattacagatggt
cgccaaaaaatcgagatgtacaaacgtttccgtaatatagaagtattgaatgatttggaa
gaactgcaaagtgatatgattgaccgttttggtgaatatccagaagaagtggaatattta
ttcacgatgacagaacttaaagtccatgcgcttgaagtcggggttgaatcagtcaaacaa
gagcaaaataagattactatgttgttttccgaaagtggtacagctggaattcgtggggat
atcgttatgcaaatcattggcgaatttggtcgaatgattggtgtaggaatggaaggtgca
caactgaaaatcactgtaaatatccaaaatataccattaaaagaatggctctaccaaatc
aaaagcttagctgaaaaacttcgtggtgctttaaaagaaaaagtatcttccgaaaactga
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