Leptospira iowaensis: AB3N60_09050
Help
Entry
AB3N60_09050 CDS
T10746
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
liow Leptospira iowaensis
Pathway
liow03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
liow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB3N60_09050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
liow03400
]
AB3N60_09050 (mfd)
Enzymes [BR:
liow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB3N60_09050 (mfd)
DNA repair and recombination proteins [BR:
liow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB3N60_09050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
XDD48219
LinkDB
All DBs
Position
1:complement(1927455..1930793)
Genome browser
AA seq
1112 aa
AA seq
DB search
MPESAHSFVTSELYKNKHSKDTFVVVLPTNQDAESFSRELLSFIKREEIFFFPGPENIPY
EYTKWQAEWKRDRILTINRILNGDRCIVVTSVSALLRKLPNRESLKGKSISLKLGKDIPL
DSLLSDLVQLGYHREEVCEQFGHFSLKGGILDIYTPFLANPVRIDFFGDTVDEIRTFDPN
TQKSISKISEIVITAANETVVTKKELEKYHTIIKEYTDKRIPIDSEIEIIEEHLPLVRKQ
EGFLEFFSNAPVILFPKYFETKERSFGMEREYNTLFEKKKEESLCLPPEELLSFGLEWKM
LTSDGSRGIQFSLLPNPISNFGYTPITEVKAFRGKIREAKEYFLELLVEHPNDCIFITSS
FLAQMLRLKGLFSETEVNVIGENSEEPIPFPFGSTKPGIHLILSDLKRGFHLVENGIYVF
TDNDLFGRQYKRKTRYKKQSSQMIESFIDLKEGDYIVHVNHGVGRFIKMERTKADGKERD
FLKLEYASGDSLFVPLDQISLVQKYIGGTDSPRLDTLGKNSWKKAKERVQESVDKLAEEL
VLLYSNRMKLNGFAFPPDTIWQEEFEAAFEFEETPDQISAIEAVKQDLESQRPMDRLVCG
DVGYGKTEVAIRAAFKVIMAGKQVMLLTPTTILSLQHFNTFKSRYENYPIKIAFVSRFRS
ASEIREDLKNFTEGKIDMLIGTHAILSSKVKPKNLGLLIIDEEQKFGVTHKESIKKFKNL
VDVLTLTATPIPRTLHMALTGIRELSIISTAPKNRQSVETYVLEEDDTLIQEAIRKEIER
GGQVFYLYNRVESIEEEASYVRSLVPEVSVGILHGQLTEDEIEETLVDFYERKYDILITT
TIIESGIDMPNVNTLIVKRADMFGLSQLYQIRGRVGRSDRKAYAYMFYPSKKLMTELAEK
RLNTIFEYQELGSGFKVAMRDLEIRGAGNLLGKEQSGDIMEVGFDLYVKMLEEAISRIKG
EEVRVEVRTAVNLKTNFYLPDEYIPDTKQKIEFYKRFEGSANLDEIEELSLEMEDRFGEL
PQIAKTFVELEKIRTLASNLGFEFVTEKPEEVLFKCGTYFRGNPDRVIQAMSHFKGLTIA
PSEPSVLRYTNIEKDDLKKIKKLLGILEFLAA
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atacctgaatctgctcattcttttgttaccagtgaattgtataaaaacaaacattctaaa
gatacatttgttgttgtactaccaacaaaccaagacgcagaaagcttttctcgggaatta
ctaagttttatcaaaagggaagaaatattctttttcccaggtccagaaaatattccttat
gaatatacaaagtggcaagctgagtggaaacgtgatcgtattttgaccatcaatcgtatc
ttaaatggagatcgttgtatagtcgtgacatcagtttcagccttacttcgaaaattaccg
aatcgcgagagtttaaaaggaaaatcgattagtttaaaacttggcaaagatattccgtta
gattccttattatcggatttagtccagttaggttaccaccgagaagaagtttgtgaacaa
tttggtcattttagtttaaaaggtgggattctcgatatatatacaccttttttggctaac
ccagtgcgaatcgattttttcggggatacagttgatgaaattagaacttttgatccaaat
acccaaaaatcaatttcaaaaatcagtgaaattgttatcactgcagctaatgaaaccgtt
gtaacaaaaaaagaattagaaaaatatcatacaataattaaagaatatactgataagcga
attccaatagattctgagatagaaatcatcgaagaacatttgcctttggttcggaaacaa
gagggttttttggagtttttttcaaacgctccggtcatactttttccgaaatattttgaa
acaaaagaacgttcttttggaatggaaagagaatacaacactctttttgagaagaaaaaa
gaagaatcactttgtctaccaccggaagaattattatcttttggactagagtggaaaatg
ttaacatctgatggatcaaggggaatccaattttcacttctaccaaatcccatttcaaat
tttggatacactccgattacagaagtaaaagcatttcggggtaaaattcgagaagcaaaa
gaatattttttagaattacttgttgaacatcctaacgattgtatatttatcacttcttcc
tttcttgcgcagatgttacgcctaaagggtttattttctgaaactgaagtgaatgtcata
ggtgaaaacagtgaagaacccattccatttccttttggttctacaaaacctgggatccat
ttgatcctttctgatttaaaacgtggttttcacttggttgaaaatggaatttatgttttt
accgataacgatttgttcggacggcaatacaaaaggaaaactagatataaaaaacaatcc
tcacaaatgattgaatccttcatagatttaaaagaaggagactacattgttcacgtaaac
catggagttgggcgtttcataaaaatggaacgaacaaaggcagatggaaaggaaagagat
tttctaaaattagaatatgcaagtggggatagtttgtttgttccacttgaccaaatttcc
cttgtacaaaaatacattggtggcaccgattcacccaggttagataccttaggcaaaaat
tcctggaaaaaagcaaaagaacgagtccaagaatcggtagataaactcgccgaagaactt
gtgttattgtattcgaatcggatgaagttgaatggttttgctttcccaccagatactatt
tggcaagaagagtttgaagctgcgtttgagtttgaagaaacaccggaccaaatttcagct
attgaggctgtaaaacaagacttagagtctcaaagaccaatggatcgtttggtttgtggg
gatgttggttatggaaaaacagaagtagcaattcgggctgcgtttaaagtgatcatggct
ggaaaacaagtgatgttactcacaccaacgacaattctatcactccaacattttaatact
tttaaatcaaggtatgaaaactatccaatcaaaattgcttttgtttcaaggtttcgatct
gcttccgaaattcgagaagatttaaagaattttacagaaggtaaaattgatatgttaatt
ggaacacatgcaattttatcctccaaggtgaaacctaaaaatttaggattattgatcatt
gacgaagaacagaagtttggtgtaacacataaagaatccatcaaaaaatttaaaaactta
gtagatgttttaactctgactgctactccaatccccagaaccttacatatggctctcacg
ggcatcagagaactttctattatatccacggcgccaaaaaatagacaaagtgtagaaact
tatgttttggaagaggatgacacacttattcaagaggcaattcgaaaagaaatagaacga
ggtggccaagttttttatctatataatcgtgtagaatctattgaagaagaagcatcgtat
gtgcgttccttagttcctgaagtttctgttggaattttacatggacaattgacagaagat
gaaattgaagaaaccttagtagatttttatgaaagaaaatatgatatcctaatcactaca
acgatcattgaatcagggattgatatgccaaatgtcaatactttaattgtaaaacgtgct
gacatgtttggactttctcaattgtaccaaattcgaggtagagttgggaggtcagaccgt
aaagcttacgcttatatgttctatccatccaaaaaactgatgacggagcttgctgaaaaa
agactcaatacaattttcgaataccaagagttaggttctggttttaaagtagctatgcga
gatttagaaattcgcggggctgggaatttattaggtaaagaacaatctggcgacattatg
gaagtgggttttgacctatatgttaaaatgttggaagaagcaatctcaaggattaaaggg
gaagaggttcgagttgaagtaagaactgcagtaaatctcaaaaccaatttttacctacca
gatgaatacattcctgatacaaaacaaaaaattgaattttataaacgttttgaaggttca
gcaaatttggatgaaattgaagagttatctttggaaatggaagatcggtttggtgaacta
ccacaaattgcaaaaacctttgtggaacttgaaaaaataaggacccttgcttctaatttg
ggatttgagtttgtaacagaaaaaccagaggaagttcttttcaaatgtggaacctatttc
cgaggaaacccagaccgagtgatccaagcaatgagccattttaaaggactcacaatcgca
ccttccgaaccgtctgttttgcgttatacgaatattgaaaaagatgatttgaaaaaaatc
aaaaaattgttgggaattttagaatttttggccgcttaa
DBGET
integrated database retrieval system
