Lawsonia intracellularis PHE/MN1-00: LI0199
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Entry
LI0199 CDS
T00354
Name
(GenBank) Exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lip
Lawsonia intracellularis PHE/MN1-00
Brite
KEGG Orthology (KO) [BR:
lip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lip03016
]
LI0199
Enzymes [BR:
lip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LI0199
Transfer RNA biogenesis [BR:
lip03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LI0199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Glyco_hydro_44
Motif
Other DBs
NCBI-ProteinID:
CAJ54255
UniProt:
Q1MRX1
LinkDB
All DBs
Position
complement(250984..253005)
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AA seq
673 aa
AA seq
DB search
MQDKEPQLAWVLEEFQNKFKILLPNRKEINIQSSRILPWIGPNYRNIESKDIAIAHIEQH
KFKRKELESSFNSYELWEIAQGEIIQAPAKWFSELVTTSPDIDTIAACAHVLLKDNIHFK
FQSPNFEIYSKEIVDIRVKEQEKTIKQQAFITDSIPFFRYLWELYTQKKVYSINTANVYT
QFEEQLRQIIMEQISNPEKADSQLWKKLVTGLPDDPFLALYLAQAWGILQPHHNIWFERI
DYDPTDNWQQPFQNTIDMLCKQSSLYTTSTLPLPFISIDSETTKDKDDAFFIEPIDNGWK
VVVALACPALNWPFDDPLDQAVRKRATSIYLPEASYNMLPNVLGIDKYSLHAQCTRPVLI
ITCIVGYDGVVKSCTPSFESVSLAANLTYHECEYILEDNYSEDSPYAEQLKLAFHVAQTY
QKYRLKHGAVIVERSEPYLSLIVEENETKVVLTEEFATPKSHLLVSEIMILINAAIAHWS
YENNISLFYRTQDIIIPDQYKGIWKEPHDIAKVVKVLAPSVLDVVPKKHAGIGEKYYAPS
TSPLRRYPDMVNQAQILHVLQHEKYKWSLKELEIMLPYITSRLEYTNQIQRFRQRYWKLV
YILQQDKNTWWPAIVTEVTEHYIVVNLPREQLTLRARRKLFTAVPEIGQSIYIRIGNIQP
LHNEIHILEIQQV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacaaagaacctcaacttgcttgggttcttgaagaatttcaaaataaatttaaa
atattattacctaatagaaaagaaataaatatacaatcatcaaggattcttccttggata
ggtccaaactatagaaatatagaaagtaaagatattgcaatagcacacattgaacaacat
aagtttaaacgtaaagagcttgaatcatcttttaattcttatgaattatgggagattgct
caaggagaaattattcaagcacctgcaaagtggttttctgagctagttacaacttctcca
gatattgatacaatagcagcatgtgcacatgtccttttaaaggataatattcattttaaa
tttcaatcacctaattttgaaatatattcaaaagagattgttgatattcgtgttaaagaa
caagaaaaaactataaaacagcaagcatttattactgatagtataccctttttccgttat
ttatgggagctttatacacaaaaaaaagtctattctattaatactgctaatgtttatacg
caatttgaagaacagcttcgtcagatcattatggaacaaatttcaaatccagaaaaagct
gatagtcagttatggaaaaaacttgtaacaggacttcctgatgatccatttcttgcttta
tatcttgcacaagcatggggaatattacaaccacatcataacatttggtttgagcgtata
gattatgatcctacagataattggcaacaacctttccaaaacactatagacatgttgtgt
aaacaatcttctctttatacaacgtctaccctaccccttccctttataagtattgattca
gaaacaacaaaagataaagatgatgctttttttattgaaccaatagacaatggatggaaa
gtggttgttgcattagcctgccctgcattgaattggccatttgatgatccccttgatcaa
gcagttagaaaaagagcaaccagtatttatttaccagaagcaagttataacatgttgcct
aatgtattagggatagacaagtacagtcttcatgctcaatgtactcgacctgtgcttatt
attacatgtattgttggctatgatggtgtagtaaaatcttgtacaccatcttttgaatct
gtctctcttgctgctaatcttacttatcatgaatgtgagtatattttagaggataactat
tcagaagattctccatatgctgaacaactgaagttagcttttcatgtagcacaaacctat
caaaaatatcgtcttaaacatggtgctgttatagtagaacgttcagaaccatatctttct
ctaatagttgaagagaatgagacaaaagtagtattaacagaagagtttgctactcctaaa
tctcatcttttggtttctgaaattatgatccttattaatgcagcaatagctcattggagt
tatgaaaataacatttctcttttttatagaacacaagacattataattcctgatcaatat
aaaggtatatggaaagagcctcatgatattgcaaaagtagtaaaagtgttagcaccatct
gtacttgatgtagttcccaaaaagcatgctggcatcggagaaaaatattatgcaccatca
acgtcaccattaagacgatatccagatatggttaatcaagcacaaattcttcatgtatta
caacatgaaaaatataaatggtctttaaaagagttagagataatgctaccttatattact
tctcgtcttgaatatacaaaccaaatacagcggtttcgacaaagatattggaagttggta
tatattcttcaacaagataagaatacatggtggccagctattgttactgaggtaacagaa
cattacattgttgttaatttgccaagagagcaacttactcttcgggctcgtcgaaaactt
tttacagctgttcctgaaataggacagtctatttatattcgtataggtaatattcaacca
ctacataatgaaattcatatattagaaattcagcaagtctaa
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