Lawsonia intracellularis PHE/MN1-00: LI0313
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Entry
LI0313 CDS
T00354
Symbol
recJ
Name
(GenBank) Single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lip
Lawsonia intracellularis PHE/MN1-00
Pathway
lip03410
Base excision repair
lip03430
Mismatch repair
lip03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LI0313 (recJ)
03430 Mismatch repair
LI0313 (recJ)
03440 Homologous recombination
LI0313 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lip03400
]
LI0313 (recJ)
DNA repair and recombination proteins [BR:
lip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LI0313 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LI0313 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LI0313 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CAJ54369
UniProt:
Q1MRK7
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All DBs
Position
392879..394585
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AA seq
568 aa
AA seq
DB search
MKKWLTAPISSQIPLHWANILHIPEPILILLWQRGITSLEEMNIFLSPKLQYLAHPKHWS
GIEDAVELLNNAIEQKQPIIVWGDYDVDGVTGSTVIREVLTFHQAQIIVHLPDRKKEGYG
VNIPVIEQLALEHPKALLITVDCGISDVKAIYRARELGFTVIISDHHLPPTSLPPAHVIC
NPRIGENPCSYLAGVGIAFFLMAALNNKRAEQTGQRMDMRDVLDLVALGTLADMAMLSGQ
NRILVKNGLLKIAEAKRPGIAALKTVSGFTPLTHLGAGQVTFHLAPRINAAGRLGSPRIA
HEMLYTTSKDFAIEHATLLNKINEERRSEEEYIFNAALEQAQLENQRQGLVLHGSDWHQG
VLGIVASRITEAVHKPVLILCTDGKMLKGSGRSIADFDLYHGLSQCADLFERFGGHKQAA
GLTLPINHLHILKERFDTVVRNFFGDTPITPILHIDMELPFQKATNFNFLKSLELLQPFG
IGNPEPIFSSLPLRIQRCNTFGKHKEHINMLVVEEISGISLQAKGWRLAKNISSSLQNSR
IQLAYTPSLNFYNGISSIELEIKDWVEL
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatggcttactgctcctattagttcccaaatacctttacactgggccaatatt
ctccatattccagaacctattcttatcctcctttggcaaagaggtattacctctttagaa
gaaatgaatatttttctttcccctaaacttcagtacttagcacacccaaaacactggagt
ggaattgaagatgcagtcgaacttttaaataatgctatagaacaaaaacaacctatcatt
gtttggggagactatgatgtggatggagttactggttctactgttattcgtgaagtacta
acatttcatcaagctcaaattattgtacatctcccagatcgcaaaaaagaaggctatggg
gttaatatacctgtaatagaacaattagctctagaacatccaaaagcacttctgattact
gttgactgtggaattagtgatgttaaagccatataccgtgcacgagaacttggatttaca
gtcattatttctgatcaccatctccctcctacatctttacctccagcacatgtaatctgc
aatccccgtataggagaaaatccttgttcataccttgcaggtgttggtattgcttttttc
ctgatggcagcacttaataataaacgtgctgagcaaacgggtcagcgtatggatatgaga
gatgttcttgatcttgtagcacttgggacacttgctgatatggctatgcttagtggacaa
aatcgtattttagtaaaaaatggacttcttaaaattgctgaagctaagagacctggaatt
gcagcattgaaaactgtttctggctttactcctttaacacatttaggtgctgggcaggta
acattccaccttgcacccagaattaatgctgcaggtagattaggtagtcctcggatagca
catgaaatgctttatacaacctcaaaagactttgctattgaacatgcaactcttttaaat
aagataaatgaagaacgccgtagtgaagaagaatatatttttaatgcagcattagagcaa
gctcagttagaaaatcaaagacaaggacttgttcttcatggttctgactggcatcaaggt
gtccttggaattgttgcatctcgtatcacagaagctgttcataaacctgttcttatactc
tgtactgatggtaaaatgctgaaaggatcaggaagatcaattgctgattttgacttatac
catgggttatctcaatgtgctgatttatttgaacgctttggaggtcataaacaagctgca
ggattaacattaccaattaaccatcttcatattctaaaagaacgatttgatactgttgtt
agaaatttttttggagatacacctattacacctattcttcatattgacatggaactccct
tttcaaaaagctactaactttaattttttaaaatctctagaattattacaaccttttgga
ataggaaaccctgaacctatttttagttctcttcctttacgtatccaacgttgtaataca
tttggaaaacataaagaacacattaatatgttagtagtagaagaaatctcaggcatatcc
cttcaagctaaaggttggagattagcaaaaaatatatcttcatccttacaaaactctcga
atccaattagcttatactccatcactcaacttttataatggtattagtagtattgaactt
gaaataaaagattgggttgaactttaa
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