Lactobacillus intestinalis: KBW87_01280
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Entry
KBW87_01280 CDS
T08339
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
liq
Lactobacillus intestinalis
Pathway
liq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
liq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBW87_01280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
liq03019
]
KBW87_01280
03009 Ribosome biogenesis [BR:
liq03009
]
KBW87_01280
Enzymes [BR:
liq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KBW87_01280
Messenger RNA biogenesis [BR:
liq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KBW87_01280
Ribosome biogenesis [BR:
liq03009
]
Prokaryotic type
rRNA helicases
KBW87_01280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DeaD_dimer
AAA_22
LidA_Long_CC
Motif
Other DBs
NCBI-ProteinID:
UTW40557
LinkDB
All DBs
Position
266808..268286
Genome browser
AA seq
492 aa
AA seq
DB search
MKFSELGLNDALLKAIRRSGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPIL
QNLDKQHKTIQAVVIEPTRELAIQTQEELFRLGRDENARVQVVYGGADIGRQIRSLKNHV
PAILVGTPGRLLDHLKRGTISLDEVKTIVLDEADEMLDMGFISDIESILNYAKNRTQTLL
FSATMPKPILRIGEKFMHNPEIVRIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP
DLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQVRRMSVLKRFRSGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTK
KKMLPLRPPTDDQALHGQLKAAKAQIEELLKGDLSKYEKEANELLENYSALDLVAAFLKN
LSKDSSEVKVKITPEKPLPYKGNGRKNHGRGRGKSRGHDRNRHGNFNKRNQKGRTRRGHG
NGHEFVIKNKKG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattttcggaattaggattaaatgatgcgcttcttaaggccattagacgttcaggc
tttgaagaagcaacccccatccaagaacaaactattccacttgccttggagggaaaagat
gtaattggtcaagctcaaactggaactggtaaaactgcagcttttggcttgccaatttta
caaaatttagataaacaacataaaacaattcaggcagttgtaattgaaccaactcgtgaa
ttagctattcaaactcaagaagaactctttcgcttgggccgtgatgaaaatgcgcgggtg
caagttgtgtacggaggagcagatatcggtcgtcaaattcgctctttgaaaaaccatgta
cctgctattttagtagggactcccggtcgtcttcttgaccacttaaaacgcggaactatt
agtttagatgaagttaagaccatagttcttgatgaagctgatgaaatgcttgatatgggc
tttattagtgatattgaaagtattttgaattatgctaaaaatcgtactcaaactttactt
tttagtgctacaatgcctaagccaattttgcgaattggcgaaaagtttatgcacaatccc
gaaattgtacgaattaaggctaaagaattaactgcagacttaattgatcaatactttgtc
cgagcaaaagaatctgaaaaattcgatattatgtgtcgcttaattgacgttcaaggtccc
gatctggctgttgtatttggtcgtactaagcgacgtgtagatgagcttacacgtggtttg
caagctcggggatataatgctgcaggaattcacggcgatctttctcaggtacgtagaatg
agcgttttgaagagattccgttccggtaagcttgacatcttggtagccactgacgtggca
gcgcgtggacttgacatttctggagttacccacgtttacaattacgatattcctcaagat
ccagattcttatgttcaccgcattggtagaactggtcgtgctggacaaaatggtatttca
gttaccttcgtaactccaaatgaaattggctatatgcgaactattgaacaactgactaag
aagaaaatgttacctcttcgtccaccaacagatgatcaagcacttcatggtcaattaaaa
gctgctaaagctcaaattgaagagcttttaaagggtgatttaagtaagtatgaaaaagaa
gctaacgaacttttagaaaactactcagctcttgatttagttgcagcatttttgaagaat
ttatctaaagattctagcgaagtaaaagttaagattactccagaaaagccattgccatat
aagggtaatggacgtaagaatcatggtcgcggacgtggtaagagtcgcggtcatgatcgc
aaccgtcatggcaattttaacaagcgtaatcaaaaagggcgtactaggcgtggccacgga
aatggacatgaatttgtcattaaaaataaaaaaggttaa
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